Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M16
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    46   7e-06
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    44   2e-05
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.1  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   6.1  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   8.0  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 24/47 (51%), Positives = 27/47 (57%)
 Frame = +3

Query: 690 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRTXXFEPPKHPKYQRKS 830
           V KA  AQ+ V KG H K  RK+R S  FRR    E  + PKY RKS
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKS 49


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 27/47 (57%)
 Frame = +3

Query: 690 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRTXXFEPPKHPKYQRKS 830
           V KA  AQ+ V KG H K  +K+R S  FRR    +  + PKY RKS
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKS 49


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 590 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 679
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 35  KICLCHDATEEATREIGSPGQTRGKETGNSQNT 133
           KIC  H     +T+  G  G  + +  G SQNT
Sbjct: 875 KICEEHAVPNGSTKFTGKKGNKKKRNLGKSQNT 907


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 737 WEESTENSQLCAFPQNXXV 793
           WE  T+N QL A P+N  V
Sbjct: 186 WENITKNQQLIAIPRNPTV 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,577
Number of Sequences: 5004
Number of extensions: 25959
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)