Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M15
         (891 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006665-1|AAP35311.1|  529|Homo sapiens karyopherin alpha 2 (RA...    31   7.4  
BC005978-1|AAH05978.1|  529|Homo sapiens karyopherin alpha 2 (RA...    31   7.4  
U46744-1|AAC50429.1|  686|Homo sapiens dystrobrevin-alpha protein.     30   9.8  
U28386-1|AAA69957.1|  529|Homo sapiens hSRP1alpha protein.             30   9.8  
U09559-1|AAA65700.1|  529|Homo sapiens Rch1 protein.                   30   9.8  
BC067848-1|AAH67848.1|  529|Homo sapiens karyopherin alpha 2 (RA...    30   9.8  
BC053343-1|AAH53343.1|  529|Homo sapiens karyopherin alpha 2 (RA...    30   9.8  
AJ303086-1|CAC83080.1|  529|Homo sapiens karyopherin alpha 2 pro...    30   9.8  

>BT006665-1|AAP35311.1|  529|Homo sapiens karyopherin alpha 2 (RAG
           cohort 1, importin alpha 1) protein.
          Length = 529

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 216 GTLSSALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIICNKETLFDFERLDTQLK 43
           GT+   ++LVHC +   ++ L ++ +T    +++  + +I    E L + E+L   ++
Sbjct: 408 GTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAENLGETEKLSIMIE 465


>BC005978-1|AAH05978.1|  529|Homo sapiens karyopherin alpha 2 (RAG
           cohort 1, importin alpha 1) protein.
          Length = 529

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 216 GTLSSALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIICNKETLFDFERLDTQLK 43
           GT+   ++LVHC +   ++ L ++ +T    +++  + +I    E L + E+L   ++
Sbjct: 408 GTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAENLGETEKLSIMIE 465


>U46744-1|AAC50429.1|  686|Homo sapiens dystrobrevin-alpha protein.
          Length = 686

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +1

Query: 349 QESTVTKSAQLKRAVSARVLQGRASLCRQRNMRNHINDAPKQYPINSSTLCATRTETRIA 528
           QES      QL+  +     QG  +    R+ R+H    P   PI S++ C+T T T   
Sbjct: 479 QESRRELMVQLEGLMKLLKTQGSGT---HRSSRSHSISRPIPMPIRSASACSTPTHTPQD 535

Query: 529 LFIAEGG--PECFQQKT-ENLRH 588
                GG   E F Q +  NLR+
Sbjct: 536 SLTGVGGDVQEAFAQSSRRNLRN 558


>U28386-1|AAA69957.1|  529|Homo sapiens hSRP1alpha protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 216 GTLSSALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIICNKETLFDFERLDTQLK 43
           GT+   ++LVHC +   ++ L ++ +T    +++  + +I    E L + E+L   ++
Sbjct: 408 GTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIE 465


>U09559-1|AAA65700.1|  529|Homo sapiens Rch1 protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 216 GTLSSALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIICNKETLFDFERLDTQLK 43
           GT+   ++LVHC +   ++ L ++ +T    +++  + +I    E L + E+L   ++
Sbjct: 408 GTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIE 465


>BC067848-1|AAH67848.1|  529|Homo sapiens karyopherin alpha 2 (RAG
           cohort 1, importin alpha 1) protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 216 GTLSSALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIICNKETLFDFERLDTQLK 43
           GT+   ++LVHC +   ++ L ++ +T    +++  + +I    E L + E+L   ++
Sbjct: 408 GTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIE 465


>BC053343-1|AAH53343.1|  529|Homo sapiens karyopherin alpha 2 (RAG
           cohort 1, importin alpha 1) protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 216 GTLSSALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIICNKETLFDFERLDTQLK 43
           GT+   ++LVHC +   ++ L ++ +T    +++  + +I    E L + E+L   ++
Sbjct: 408 GTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIE 465


>AJ303086-1|CAC83080.1|  529|Homo sapiens karyopherin alpha 2
           protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 216 GTLSSALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIICNKETLFDFERLDTQLK 43
           GT+   ++LVHC +   ++ L ++ +T    +++  + +I    E L + E+L   ++
Sbjct: 408 GTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIE 465


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,829,213
Number of Sequences: 237096
Number of extensions: 3085670
Number of successful extensions: 6692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6642
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)