Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_M15
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 4.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 4.5
AF003131-6|AAB54131.2| 166|Caenorhabditis elegans Hypothetical ... 29 4.5
U70849-1|AAF99923.1| 381|Caenorhabditis elegans Hypothetical pr... 29 5.9
L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical pr... 29 5.9
L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical pr... 29 5.9
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 5.9
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 5.9
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 28 7.8
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 28 7.8
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 401 GCCRGVRPCVGNEIC-ETTSMMPQNSTQSTHRLCVLQGRRPGL 526
G C +R C G +C E + P S +C+ G +P L
Sbjct: 536 GSCSNLRECTGGSVCREGWCICPDPSMIVNRGICIQSGPKPTL 578
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 401 GCCRGVRPCVGNEIC-ETTSMMPQNSTQSTHRLCVLQGRRPGL 526
G C +R C G +C E + P S +C+ G +P L
Sbjct: 633 GSCSNLRECTGGSVCREGWCICPDPSMIVNRGICIQSGPKPTL 675
>AF003131-6|AAB54131.2| 166|Caenorhabditis elegans Hypothetical
protein C09D1.2 protein.
Length = 166
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 418 ASLCRQRNMRNHINDAPKQYPINSSTLCATRTETRIALFIAEGGPECFQQKTENLRHA 591
A +C ++ R + PK + N T RT ++ + I E +CF E+ + A
Sbjct: 10 AVICEKKLHRPYSKHCPKHWVYNKETQACYRTISKTNMTILEADNKCFDYGFEHRQDA 67
>U70849-1|AAF99923.1| 381|Caenorhabditis elegans Hypothetical
protein F29B9.8 protein.
Length = 381
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -3
Query: 445 AYFVAYTRTHAPAAPELIQPFSVEHSLSQYFLENPRSSAPVWAWAFFQISVFQNILNRPS 266
A F +T HA A Q F QY +PR++ V W + + F IL + +
Sbjct: 104 AGFDIFTEIHASTAIFGAQQFDW-----QYLNLSPRANDTVTDWQKYAVDGFGEILQKYT 158
Query: 265 PLEAVS--QRYAMLLSTSGDFVF 203
+ + Q ++++ +GDF+F
Sbjct: 159 TYQVYTKDQLFSIVSYVAGDFIF 181
>L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical
protein ZC262.5 protein.
Length = 54
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 128 AAGVLADDFSQITAVVTSQCTKNNAEDKVP 217
AAG+ +SQI A V QCTK A K P
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP 35
>L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical
protein R05D3.6 protein.
Length = 54
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 128 AAGVLADDFSQITAVVTSQCTKNNAEDKVP 217
AAG+ +SQI A V QCTK A K P
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP 35
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 342 GFSRKYCDKECSTEKGCISSGAAGACV 422
GF YC + CS + G GA G C+
Sbjct: 1504 GFYGWYCSQSCSCQNGAHCDGADGRCL 1530
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 342 GFSRKYCDKECSTEKGCISSGAAGACV 422
GF YC + CS + G GA G C+
Sbjct: 1504 GFYGWYCSQSCSCQNGAHCDGADGRCL 1530
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 310 FFQISVFQNILNRPSPLEAVSQRYAMLLSTSGDFVFSIVLGALR 179
+F +V + N P+P + Y G FVF+++LG +R
Sbjct: 413 YFTAAVATSTGNNPAPTNVIEYIYMTCSWMMGVFVFALLLGQIR 456
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 310 FFQISVFQNILNRPSPLEAVSQRYAMLLSTSGDFVFSIVLGALR 179
+F +V + N P+P + Y G FVF+++LG +R
Sbjct: 413 YFTAAVATSTGNNPAPTNVIEYIYMTCSWMMGVFVFALLLGQIR 456
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 310 FFQISVFQNILNRPSPLEAVSQRYAMLLSTSGDFVFSIVLGALR 179
+F +V + N P+P + Y G FVF+++LG +R
Sbjct: 413 YFTAAVATSTGNNPAPTNVIEYIYMTCSWMMGVFVFALLLGQIR 456
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,066,687
Number of Sequences: 27780
Number of extensions: 472398
Number of successful extensions: 1162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -