Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M12
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   6.2  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   8.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   8.2  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   8.2  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 427 RIDITELHIHLRQFYWLNRSLRYCIYI 347
           RID  +L   +R+F+W+++ LR C+ +
Sbjct: 518 RIDTNDLS-SVRRFFWIHKVLRGCLLL 543


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 275 AATITTPETMVVSRSDDAETEATLDVD 355
           A T+T P T + S  +DAE++A L  D
Sbjct: 23  AGTVTKPVTKMSSYIEDAESDAELPQD 49


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +2

Query: 614 YHKELVPHTSLPEHVTRTISLVSVNVEAFTKXHIQFDIRXVVGVSEPVFTXMQXNLQTRG 793
           YH  L P  +LPE +   ISL +   +         D R V G+     T  +  +Q  G
Sbjct: 392 YHGALAPIYNLPEVIPCAISLHNAEFQGLWPLQSSIDEREVCGLFNVSKTICREYIQF-G 450

Query: 794 NLVXRFH 814
           N     H
Sbjct: 451 NAFNLMH 457


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 437 HGYCSACAKCCKQISRSQ 490
           H YC +CAK  K   RSQ
Sbjct: 214 HVYCGSCAKVLKTSKRSQ 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,479,859
Number of Sequences: 5004
Number of extensions: 68987
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)