Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M11
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.009
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.3  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    26   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 887 PXPXPPPRAXXGPPPXPPPAXSXPGGG 967
           P P PP  A  GPPP PPP  +   GG
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 34.3 bits (75), Expect = 0.026
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 887 PXPXPPPRAXXGPPPXPPPAXSXPGGG 967
           P P PPP    G PP PPP     G G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 887 PXPXPPPRAXXGPPPXPPP 943
           P P PPP      PP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 516 PXPXPPXXGXXGPPXXPGXXAGXPPP 593
           P P P   G   PP  PG     PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 887  PXPXPPPRAXXGPPPXPPPAXSXP 958
            P P PPP +   PPP  PP  + P
Sbjct: 1705 PTPPPPPMSVP-PPPSAPPMPAGP 1727



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = +3

Query: 513  APXPXPPXXGXXGPPXXPGXXAGXP--PP 593
            AP P PP      PP  P   AG P  PP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -1

Query: 969 GPPPGXXXAGG-GXGGGPXXARGGGXGXG 886
           GPPPG    GG G  GG     GG  G G
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGFG 227



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 24/86 (27%), Positives = 24/86 (27%)
 Frame = -3

Query: 589 GGXPAXXPGXXGGPXXPXXGGXGXGAQKAEXPRXRGXGGGXXXGGEALPPXPRARGKXXX 410
           GG      G  GGP  P  GG G            G  GG   G       P   G    
Sbjct: 187 GGGFGGFGGGSGGP-PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 409 GKGGXTXXXXXLEGGXXKGMXGPFXP 332
           G GG         GG   G  G   P
Sbjct: 246 GFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 969 GPPPGXXXAGGGXGGGPXXARGGGXG 892
           G P G     GG GGGP    GGG G
Sbjct: 228 GGPGGFEGGPGGFGGGPG-GFGGGLG 252


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 957 GXXXAGGGXGGGPXXARGGGXG 892
           G     GG GGG   ARGGG G
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRG 41



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 942 GGGXGGGPXXARGGGXGXG 886
           GG  GGG   ARGG  G G
Sbjct: 33  GGARGGGRGGARGGRGGRG 51


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 887 PXPXPPPRAXXGPPPXPPPAXSXP 958
           P   P P A   PPP P PA + P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 887 PXPXPPPRAXX-GPPPXPPPAXSXP 958
           P P PPPR+   G  P PP   S P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAP 361



 Score = 22.6 bits (46), Expect(2) = 6.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 887 PXPXPPPRAXXGPPP 931
           P P PP R   G PP
Sbjct: 312 PPPPPPSRRNRGKPP 326



 Score = 21.8 bits (44), Expect(2) = 6.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 923 PPPXPPPAXSXPG 961
           PPP PPP  +  G
Sbjct: 337 PPPPPPPRSNAAG 349


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 887  PXPXPP-PRAXXGPPPXPPPAXSXP 958
            P   PP P+   G PP PPP+ + P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 899  PPPRAXXGPPPXPPPAXSXP 958
            P P+   G PP PPP+ + P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPP 1199


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +2

Query: 887 PXPXPPP--RAXXGPPPXPPP 943
           P P PPP       PPP PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +2

Query: 887 PXPXPPPRAXXGP--PPXPPP 943
           P P PPP     P  PP PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 969 GPPPGXXXAGGGXGGGPXXARGGGXGXG 886
           G  PG    GGG  GG   ++G G G G
Sbjct: 439 GSFPGGGFPGGGFPGGSYNSQGFGMGGG 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,722
Number of Sequences: 5004
Number of extensions: 13814
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)