Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M10
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.50 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   3.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   6.1  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   6.1  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 731 CLRCWGKSGNWNSWR 687
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 761 LNAYYYYFHSHLPXWWNSGKYGAFK 835
           LN Y  YF +H P      K+G+FK
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFK 143


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -2

Query: 693 LAYITNLFVFFDNSVIITYFLVKATIHHLNVVHFILTSMLT 571
           L++++ +FVFF      + FLV   ++ +N++   +T++LT
Sbjct: 96  LSFLSAIFVFF------SIFLVNQAVNIINIIVVFITTLLT 130


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 671 NKFVMYANYSNSLTYPNNEDRIAYLTED 754
           +KF MY N +  +++ +  ++IAY  ED
Sbjct: 563 SKFNMYGNKAEEISHMSEVEQIAYARED 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,115
Number of Sequences: 5004
Number of extensions: 68475
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)