Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M08
         (1328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.63 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.88 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 1328 PPXXXXPPXPXSPPPXPPPXPP 1263
            PP    PP P  PP  PPP  P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = -1

Query: 1328 PPXXXXPPXPXSPP-PXPPPXPP 1263
            PP    PP P +PP P  PP  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAP 1731


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect(2) = 0.88
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 1307 PXPXSPPPXPPPXPP 1263
            P P  PPP PP  PP
Sbjct: 234  PLPAPPPPPPPTLPP 248



 Score = 21.0 bits (42), Expect(2) = 0.88
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 1325 PXXXXPPXPXSPPP 1284
            P    PP P  PPP
Sbjct: 184  PSDYNPPPPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
 Frame = -1

Query: 1328 PPXXXXPPXPX---SPPPXPPPXPP 1263
            PP    PP P     PP  PPP PP
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 1325 PXXXXPPXPXSPPPXPPPXPP 1263
            P    PP P  PPP P   PP
Sbjct: 139  PPTSAPPRPSIPPPSPASAPP 159


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 1328 PPXXXXPPXPXSPPPXPPPXPP 1263
            PP    P    + PP PPP PP
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 1325 PXXXXPPXPXSPPPXPPPXPP 1263
            P    PP P    P PPP PP
Sbjct: 748  PIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 1328 PPXXXXPPXPXSPPPXPPPXPP 1263
            PP    PP      P PPP PP
Sbjct: 761  PPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 944,644
Number of Sequences: 5004
Number of extensions: 6161
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)