Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M07
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.66 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.87 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 536 PPPPXPPXPPP 568
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 777 PPPXXPPPPXPPXXXP 824
           PP   PPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 524 PXPXPPPPXPPXPPP 568
           P P PPPP P    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 534 PPPPXXPPXPP 566
           PP P  PP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 542 PPXPPXPPPXP 574
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 524 PXPXPPPPXPPXPPPXPXP 580
           P   PPP  PP  PP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +1

Query: 745 PXXPPXXXXXPPXPXXPXPPXXXXXPPPPXXP 840
           P   P     P  P    PP     PPP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 780 PPXXPPPPXPPXXXPXPXP 836
           P   PPP  PP   P   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/28 (32%), Positives = 9/28 (32%)
 Frame = +3

Query: 720 PPXXPXXXXXXXPXXXXXXPPPXXPPPP 803
           PP  P              PP   PPPP
Sbjct: 641 PPIMPRVQNATDTTNFDEYPPDSDPPPP 668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,143
Number of Sequences: 438
Number of extensions: 7841
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)