Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_M05
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 61 2e-10
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 32 0.097
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 27 4.8
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 4.8
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 27 4.8
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 6.4
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 8.4
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 8.4
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 8.4
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 26 8.4
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 8.4
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 61.3 bits (142), Expect = 2e-10
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Frame = +2
Query: 230 REDQSVWERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQSYINAG-AIVQED----IS 394
R + E R+ +P K L G ++ ++ S++RA+ + + G +V E
Sbjct: 9 RAETKPLEERSALTPRTAKILADAGFQITIERSSQRAFKDKEFERLGFPMVPEGSWRHAP 68
Query: 395 EASVIFGVKQTPIDLLIPNK-TYCFFSHTIKAQEANMPMLDAMLAKNIRLIDYEKLMDDK 571
+ + I G+K+ P + P K T+ F+H K QE +L A N L D E L DD
Sbjct: 69 KDAYIIGLKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNGLLYDLEFLQDDN 128
Query: 572 GNRVVAFGKYAGVAG 616
G RV AFG +AG AG
Sbjct: 129 GRRVAAFGYHAGFAG 143
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 32.3 bits (70), Expect = 0.097
Identities = 20/81 (24%), Positives = 33/81 (40%)
Frame = +1
Query: 562 GRQGESGSRLREVRRSCRNGEHSARTRSQAIGSRTPHSLHAYRSRSQLPEF*YGPPSYPG 741
G G ++ + NG H + G++TP + + S LP F PP++
Sbjct: 643 GHSGRMNVPYAKLSYTSHNGRHGG-SNGNISGAKTPMTNYTINSMPSLPVF---PPAFIV 698
Query: 742 RGIXSCLXNDAQIPGTADVRI 804
G L + +PG DV +
Sbjct: 699 PGTHQKLDESSPVPGIDDVTV 719
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 748 SRVPDSLAGHTRIPVVVSGTYMHEGSVVSE 659
SRV D + +IP+VV GT+ + S++ E
Sbjct: 82 SRVIDEIHSQGKIPIVVGGTHYYLQSLLFE 111
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 629 ECSPFLQLLRTSRRRLPDSPCRPSTSRSLLNECSL 525
E P QLL SR+ P P PS + C+L
Sbjct: 215 ELDPTQQLLTQSRKNQPVPPDSPSIPNDSIENCNL 249
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -3
Query: 197 KNKKQRFELFDPLNRRVADLCNICNLKLSN----TSQ*I*FDNEPSKPQY 60
+N+K+ F LFD +AD ++K TS+ I DN PS P+Y
Sbjct: 188 RNEKKNFLLFDMPTHPIADTSIKDSIKKRVVSVLTSRVIEIDNSPSFPEY 237
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 253 KTSAIFTIEREKSRQRRSEGHRPALQSASIPYAVLHK 363
KTSAI E K + RS S +P +VLH+
Sbjct: 402 KTSAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHR 438
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -1
Query: 760 GNXVSRVPDSLAGHTRIPVVVSGTYMHEGSVVSESQ*PETESVQNVH 620
G+ SRV SL G + P SGT++HEGS++ E S +VH
Sbjct: 184 GSPSSRVVGSLQG-SYCP---SGTHLHEGSLLLEDS-SARHSSDSVH 225
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 433 NRSLLHSKYNAGFADVLLHYRPSIYVRLHRVCS 335
N + H K+ F + LL Y PSI+ L ++ S
Sbjct: 626 NLGIQHDKHPTKFMEDLLTYGPSIFEELRKLNS 658
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 251 ERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQS 355
E+ PF+P +K++ +G K PSN + P +S
Sbjct: 483 EQNTPFTPPLLKTVNLDGNKDFTFPSNSQNSPSKS 517
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 661 ESQ*PETESVQNVHHSCNSCVLPEGDYPIPLV 566
ES P E V+N+H L + +Y IP+V
Sbjct: 63 ESSEPTHEDVRNIHSHTKISSLKKNNYGIPVV 94
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 410 FGVKQTPIDLLIPNKTYCFFSHTIKAQEANMPMLDAMLAKNIRLIDYEKLMDDKGN 577
F ++ + DL+ + T+C ++HT E P + A L++ EK+ GN
Sbjct: 691 FDIRASGKDLVPNHLTFCLYTHTAIFDEKYWP--KGIRANGHLLMNGEKMSKSTGN 744
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,743
Number of Sequences: 5004
Number of extensions: 73748
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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