Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_M04
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 146 1e-35
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 144 6e-35
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.27
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.3
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 4.4
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 29 4.4
AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical... 28 7.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.7
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 146 bits (355), Expect = 1e-35
Identities = 73/187 (39%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Frame = +2
Query: 122 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 295
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71
Query: 296 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANXISLSPTTGNLLGLLAENG 475
+ +L + K + K +EF+++PT+K + K A++ ++ + L+ TGN LGLLAENG
Sbjct: 72 ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131
Query: 476 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNXEXAXKKFXKGHETVXLTAX 655
RL KLE+V+++F+ +M AHRGE+ +V +A+ L + ++ A K K + + +T
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYA 191
Query: 656 VDPSLXG 676
V PS+ G
Sbjct: 192 VKPSILG 198
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 144 bits (350), Expect = 6e-35
Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 2/174 (1%)
Frame = +2
Query: 161 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIK 334
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD + +L + K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63
Query: 335 TDAKLKEFIINPTIKRSMKVDALKHVANXISLSPTTGNLLGLLAENGRLGKLEAVINAFK 514
+ K +EF+++PT+K + K A++ ++ + L+ TGN LGLLAENGRL KLE+V+++F+
Sbjct: 64 DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123
Query: 515 IMMAAHRGEVACEVVTAKPLDQAQRQNXEXAXKKFXKGHETVXLTAXVDPSLXG 676
+M AHRGE+ +V +A+ L + ++ A K K + + +T V PS+ G
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILG 177
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +2
Query: 755 PPPXPXPXPXSXGPRXLPLXRAXRXPTLIXSPPXNSXQPPP 877
PPP P P P P LP P PP PPP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPP 67
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 755 PPPXPXPXPXSXGPRXLPLXRAXRXPTLIXSPPXNSXQPPP 877
PPP P P P P+ P P PP PPP
Sbjct: 40 PPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/72 (29%), Positives = 24/72 (33%)
Frame = +2
Query: 656 VDPSLXGWXGCXQLGINISXXSVARNGXXXXXPPPPXPXPXPXSXGPRXLPLXRAXRXPT 835
VD L G+ G G S N PPPP P P P +P+ P
Sbjct: 213 VDNFLFGFGGGGGCGCGSSCGGC--NMGCSCLPPPPSPVCMPPPPPPCPMPIPCPPPPPA 270
Query: 836 LIXSPPXNSXQP 871
PP QP
Sbjct: 271 CSCPPPVTMYQP 282
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 752 PPPPXPXPXPXSXGPRXLPLXRAXRXPTLIXSPPXNSXQPPP 877
PPPP P S P P+ P I SPP PPP
Sbjct: 324 PPPPPPMKLDPSPQPAATPVEITEIPP--IISPPAPPPPPPP 363
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 755 PPPXPXPXPXSXGPRXLPLXRAXRXPTLIXSPPXNSXQPPP 877
PPP P P + GP +P P+ P PPP
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 337
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 755 PPPXPXPXPXSXGPRXLPLXRAXRXPTLIXSPPXNSXQPPP 877
PPP P P + GP +P P+ P PPP
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 347
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 735 VPXXXXPPXPXPXPXXXPXXX-GXSXXXGPFGXPP**XPPRPTXANPH 875
+P PP P P P P G S GP G PP PP P+ PH
Sbjct: 54 LPDPSSPP-PAPRPSGQPPGPQGPSDLPGPSGAPP--GPPHPS-GPPH 97
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 295 RGKRTLPVSTVYQN*CKAQGIHHQPDNKKKHEGRCVETCRQ*XQSFSYNW 444
R RTL V+++++ + I PD + KHEG CV+ + + +N+
Sbjct: 406 RESRTLKVTSIHEKPYVIEKI--MPDGRIKHEGFCVDLLDKLAEMLHFNY 453
>AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical
protein F25E5.2 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 254 ALFSAASKTKALDIVEKELCQFQQSIK 334
+LF+AA+KT + D+VE LC + S +
Sbjct: 134 SLFTAANKTISQDLVENGLCSKEDSFR 160
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/62 (24%), Positives = 20/62 (32%)
Frame = +2
Query: 692 QLGINISXXSVARNGXXXXXPPPPXPXPXPXSXGPRXLPLXRAXRXPTLIXSPPXNSXQP 871
Q G+ + A P P P + GP + P PP +S P
Sbjct: 484 QAGLQVQQQQQAAAAAAAAAAQKSPPTPPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPP 543
Query: 872 PP 877
PP
Sbjct: 544 PP 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,070,785
Number of Sequences: 27780
Number of extensions: 402347
Number of successful extensions: 1652
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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