Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M04
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 447 LPVVGERLXLLATCFNASTFMLLFIVGLMMNSLSF 343
           LP V + + LL + FN   FM+   V L +  L+F
Sbjct: 315 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNF 349


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 447 LPVVGERLXLLATCFNASTFMLLFIVGLMMNSLSF 343
           LP V + + LL + FN   FM+   V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 447 LPVVGERLXLLATCFNASTFMLLFIVGLMMNSLSF 343
           LP V + + LL + FN   FM+   V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 447 LPVVGERLXLLATCFNASTFMLLFIVGLMMNSLSF 343
           LP V + + LL + FN   FM+   V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 734 GXXXXXPPPPXPXPXPXSXGP 796
           G     P P  P P P S GP
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
 Frame = +3

Query: 756 PXPXPXPXXXPXXXGXSXXXGPFGXPP**XPP-RPTXANP 872
           P P P P   P          P   PP   PP  P   NP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,192
Number of Sequences: 438
Number of extensions: 5944
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)