Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_M03
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 823 PPPPPXRGG 797
           PPPPP RGG
Sbjct: 376 PPPPPIRGG 384


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 660 GGXAPPPXPXPPXXPPPP 713
           G    PP P PP  PPPP
Sbjct: 333 GDSDTPPKPAPP--PPPP 348



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 447 GGGXXPPXFXPPPPP 491
           G    PP   PPPPP
Sbjct: 333 GDSDTPPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 690 PPXXPPPPPP 719
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 690 PPXXPPPPPP 719
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 693 PXXPPPPPPXP 725
           P  P PPPP P
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 701  PPPPPPXP 724
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 704  PPPPPXPP 727
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 668 GPPPXPXTTXXPPPPPPXPP 727
           G PP P     P  PP  PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,036
Number of Sequences: 438
Number of extensions: 6491
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)