Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L24
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.31 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 20/93 (21%), Positives = 25/93 (26%)
 Frame = +1

Query: 523  PIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXSLXXXXXXXXXXXX 702
            P    PP+   S    P P P G  P        P  P P+  PP               
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156

Query: 703  SXPSSPXXDXXGPPXXXXTAXXFPXTRSXXXXP 801
              P  P      PP    ++   P  +     P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +1

Query: 466  KGXPXGXGTVTPAXXLXVXPIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPT 645
            K  P       P       P+   PP+   S    P P P    P        P  P PT
Sbjct: 988  KDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPT 1047

Query: 646  XXPP 657
              PP
Sbjct: 1048 STPP 1051



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/70 (22%), Positives = 17/70 (24%)
 Frame = +1

Query: 535  PPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXSLXXXXXXXXXXXXSXPS 714
            PPP+   S      P P G  P        P P      PP                 P 
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122

Query: 715  SPXXDXXGPP 744
             P      PP
Sbjct: 1123 VPKPSVAAPP 1132


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 500 PPPXXPXSPXRSRPP*XXXXQXXTPXPPHXAXP 598
           PPP  P +P +S P          P PP    P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,952
Number of Sequences: 5004
Number of extensions: 32433
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)