Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_L24
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 35 0.072
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 35 0.072
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 35 0.072
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.51
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 32 0.67
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.89
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 31 0.89
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 31 0.89
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.89
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.89
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.89
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.89
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 1.6
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.1
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 30 2.1
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 30 2.1
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 30 2.1
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 30 2.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.1
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 2.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 3.6
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 3.6
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 29 3.6
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.8
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 4.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.3
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 6.3
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 6.3
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 6.3
Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical pr... 28 8.3
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 35.1 bits (77), Expect = 0.072
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +1
Query: 496 TPAXXLXVXPIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
+P+ V P LPPP SP PSP P P P P P P PP
Sbjct: 77 SPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCP------PPPAPAAPCCPPP 124
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 35.1 bits (77), Expect = 0.072
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 535 PPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXS 663
PPPL +P P+P P PT P P P P PP S
Sbjct: 77 PPPLPLSNPPAKPTPPPPPPKPT---IRPPPIPASPPPRPPAS 116
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 556 SPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
SP P P P P + P P PP PT PP
Sbjct: 72 SPPLPPPPLPLSNPPAK--PTPPPPPPKPTIRPP 103
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 35.1 bits (77), Expect = 0.072
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 535 PPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXS 663
PPPL +P P+P P PT P P P P PP S
Sbjct: 299 PPPLPLSNPPAKPTPPPPPPKPT---IRPPPIPASPPPRPPAS 338
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 556 SPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
SP P P P P + P P PP PT PP
Sbjct: 294 SPPLPPPPLPLSNPPAK--PTPPPPPPKPTIRPP 325
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.51
Identities = 28/93 (30%), Positives = 30/93 (32%)
Frame = -3
Query: 748 WXGGPXXPXKXRKGXSR*SXXGGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRG 569
W GGP R G + GG G G G G G GG G W G G G
Sbjct: 25 WGGGPG-----RWGGWGGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWG 79
Query: 568 XXLXXAXSGGAGAXWGXRXARXRVLRFXGXVGG 470
+GG WG R G GG
Sbjct: 80 G------NGGGRGDWGGNGGGGRGGGGRGDWGG 106
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -3
Query: 685 GGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXLXXAXSGGAG 533
GG G +G G G G G G W G G G GGAG
Sbjct: 130 GGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGGAG 180
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/69 (27%), Positives = 26/69 (37%)
Frame = -3
Query: 727 PXKXRKGXSR*SXXGGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXLXXAX 548
P + ++G ++ GG G G A G G GG G + G G G +
Sbjct: 64 PNREKRGYAQYGGGGGYGGGHGGAAVGGGYGGAVGGGGGGGYGGGH--GGGHGGAVGGGY 121
Query: 547 SGGAGAXWG 521
GG G G
Sbjct: 122 GGGGGGGGG 130
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/72 (30%), Positives = 23/72 (31%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMGXTXSXX 504
G G G GG G G G G G G G G GGG G S
Sbjct: 81 GGGHGGAAVGGGYGGAVGGGGGGGY----GGGHGGGHGGAVGGGYGGGGGGGGGCQCSPS 136
Query: 503 AGVTVPWPCGXP 468
+ P P G P
Sbjct: 137 SNTCPPGPRGPP 148
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 685 GGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXLXXAXSGGAGAXWG 521
G GW + G G G+ GG G W G + + GG G WG
Sbjct: 267 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQ---QQGGWGGPQQGGGGGGWG 318
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +1
Query: 469 GXPXGXGTVTPAXXLXVXPIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTX 648
G G TP+ + + P T +P P+ P P+R+ P P PT
Sbjct: 14 GPAAGASAKTPSR-MPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTA 72
Query: 649 XPP 657
PP
Sbjct: 73 APP 75
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +1
Query: 469 GXPXGXGTVTPAXXLXVXPIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTX 648
G G TP+ + + P T +P P+ P P+R+ P P PT
Sbjct: 143 GPAAGASAKTPSR-MPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTA 201
Query: 649 XPP 657
PP
Sbjct: 202 APP 204
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 685 GGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXLXXAXSGGAGAXWG 521
G GW + G G G+ GG G W G + + GG G WG
Sbjct: 230 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQ---QQGGWGGPQQGGGGGGWG 281
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 685 GGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXLXXAXSGGAGAXWG 521
G GW + G G G+ GG G W G + + GG G WG
Sbjct: 229 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQ---QQGGWGGPQQGGGGGGWG 280
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 685 GGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXLXXAXSGGAGAXWG 521
G GW + G G G+ GG G W G + + GG G WG
Sbjct: 268 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQ---QQGGWGGPQQGGGGGGWG 319
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 685 GGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXLXXAXSGGAGAXWG 521
G GW + G G G+ GG G W G + + GG G WG
Sbjct: 267 GQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQ---QQGGWGGPQQGGGGGGWG 318
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +1
Query: 523 PIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFP-PXPTXXP 654
P+ P P+ P P P P + P PFP P P P
Sbjct: 138 PMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPMPKPKP 182
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +1
Query: 499 PAXXLXVXPIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFP-PXPTXXP 654
P L P+ +P P+ P P P P ++ PFP P P P
Sbjct: 124 PKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKP 176
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEG-XXFGXXXVRGGGSXMG 522
G G+G GG G GG+G G G G G G +G GGG G
Sbjct: 106 GGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGG 160
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical protein
R08B4.1a protein.
Length = 1137
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/82 (28%), Positives = 25/82 (30%)
Frame = -2
Query: 743 GGPXXSXXGEEGXEQVIXVXGXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXX 564
GGP S G G G G G GG G GG + G G G
Sbjct: 780 GGPTGSSGGGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGAGNG 839
Query: 563 FGXXXVRGGGSXMGXTXSXXAG 498
G G G+ G AG
Sbjct: 840 NGAGAGNGNGAGAGNGNGAGAG 861
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Frame = -3
Query: 709 GXSR*SXXGGXGWXQGXAEXGXLGXGETGGXGY----XSWSGXRXMGXXRGXXLXXAXSG 542
G S GG G G G G G +GG GY G G G A SG
Sbjct: 149 GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSG 208
Query: 541 GAGAXWG 521
G G G
Sbjct: 209 GGGCGGG 215
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Frame = -3
Query: 709 GXSR*SXXGGXGWXQGXAEXGXLGXGETGGXGY----XSWSGXRXMGXXRGXXLXXAXSG 542
G S GG G G G G G +GG GY G G G A SG
Sbjct: 149 GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSG 208
Query: 541 GAGAXWG 521
G G G
Sbjct: 209 GGGCGGG 215
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 538 PPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
PP+T P P P P G P P P PP PP
Sbjct: 736 PPITGGPP---PPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 538 PPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
PP+T P P P P G P P P PP PP
Sbjct: 736 PPITGGPP---PPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 488 EP*HPPPXXPXSPXRSRPP*XXXXQXXTPXPPHXAXPRPGT 610
EP PPP +P R P + TP PP A PRP T
Sbjct: 545 EPTPPPPPREPTP-REPTPEPEPVREPTPPPPPPAKPRPLT 584
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 526 IXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFP-PXPTXXPP 657
+ LP P SP P+P P PT P P P PT PP
Sbjct: 533 LILPSP--EPSPVREPTPPPPPREPTPREPTPEPEPVREPTPPPP 575
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 523 PIXLPPP-LTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXS 663
PI +PPP L P P P + P PF P+ PP S
Sbjct: 96 PIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTS 143
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 523 PIXLPPP-LTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXS 663
PI +PPP L P P P + P PF P+ PP S
Sbjct: 119 PIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTS 166
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 523 PIXLPPP-LTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXS 663
PI +PPP L P P P + P PF P+ PP S
Sbjct: 369 PIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTS 416
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 538 PPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
PP+T P P P P G P P P PP PP
Sbjct: 319 PPITGGPP---PPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +1
Query: 523 PIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
P+ +P P+ P P P P P P P PP P PP
Sbjct: 44 PMPMPMPMPVCPP---PPPCPAQFCPPPPICPPPPPPPMPCPPPP 85
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMG 522
G G G GG G GG G G G G G G G GGG G
Sbjct: 136 GGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGG 189
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMGXTXSXX 504
G G GG G GGNG G G G G G G G+ G
Sbjct: 813 GGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGNGNG 872
Query: 503 AG 498
AG
Sbjct: 873 AG 874
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.5 bits (63), Expect = 3.6
Identities = 28/101 (27%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Frame = -1
Query: 870 GXXERGGGXXGXVWXXXXXXVXEGXXXGGPSXGEXXGGXXXGRGAXGVXXXXXXXXXXXX 691
G + GG G W G GG G GG G G G
Sbjct: 171 GGSQDGGSQGG--WGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGG 228
Query: 690 XXXXXXGXKGXRRX----GGWXGGKRXGXXXVPGRGXAXWG 580
G R GGW GG R G GRG + WG
Sbjct: 229 WGNQGGQQGGGRGGQQGPGGWGGGGRGGGWGGWGRG-SRWG 268
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGX-GXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMGXTXSX 507
G G G GG G G NG G G S G G G + GGS G +
Sbjct: 21 GGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKAGGSGFGGGNTC 80
Query: 506 XAG 498
+G
Sbjct: 81 GSG 83
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMGXTXSXX 504
G G GG G GGNG G G G G G G G+ G
Sbjct: 443 GGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGNGNG 502
Query: 503 AG 498
AG
Sbjct: 503 AG 504
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/54 (37%), Positives = 20/54 (37%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMG 522
G G G GG G GG G G G G G G G RGGG G
Sbjct: 69 GGGWGNNGGGGNWGGNGGGGNGGG----GRGGGGGGGGGRGGGGGGRGGGGGGG 118
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXXFGXXXVRGGG 534
G G GG G GG G G G G G G G RGGG
Sbjct: 82 GGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGG 131
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +1
Query: 535 PPPLTXXSPXXXPSPX--PXGXXPTRNXXXPXPFPPXPTXXPP 657
PPP+ P P P P P P P PP P PP
Sbjct: 34 PPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +1
Query: 523 PIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
P+ PPPL P P P P P P PP P PP
Sbjct: 36 PMCAPPPLPCPPPPICP---PQFCPPPPMCPPPPPPPPPPMCPPP 77
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Frame = +1
Query: 535 PPPLTXXSPXXX---PSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
PPP T P P P P G P P PP P PP
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Frame = +1
Query: 535 PPPLTXXSPXXX---PSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
PPP T P P P P G P P PP P PP
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Frame = +1
Query: 535 PPPLTXXSPXXX---PSPXPXGXXPTRNXXXPXPFPPXPTXXPP 657
PPP T P P P P G P P PP P PP
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 314
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +1
Query: 475 PXGXGTVTPAXXLXVXPIXLPPPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPP--XPTX 648
P GT + P PPP S PSP P +++ P P PP P+
Sbjct: 447 PISTGTSYSSTTPPTTPKPAPPP---PSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSS 503
Query: 649 XPP 657
PP
Sbjct: 504 VPP 506
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 PIXLPPP-LTXXSPXXXPSP--XPXGXXPTRNXXXPXPFPPXP--TXXPP 657
P+ PPP +T P P+P P P + P P PP P T PP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 311
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = -3
Query: 739 GPXXPXKXRKGXSR*SXXGGXGWXQGXAEXGXLGXGETGGXGYXSWSGXRXMGXXRGXXL 560
GP P + G R G GW G G G G G G G G L
Sbjct: 38 GPRGPGEWNNGGGRGGFGGNNGWNNGGG--GFNGNGGFNGGGRGGGRGGNG-GFGDNGGL 94
Query: 559 XXAXSGGAGAXWG 521
GG G G
Sbjct: 95 RGGNGGGRGGNGG 107
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Frame = +1
Query: 523 PIXLPPP-LTXXSPXXXPSP--XPXGXXPTRNXXXPXPFPPXP--TXXPP 657
P+ PPP +T P P+P P P + P P PP P T PP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 321
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 538 PPLTXXSPXXXPSPXPXGXXPTRNXXXPXPFPPXPTXXPPXSL 666
PP+T SP P P P RN P PP P PP L
Sbjct: 160 PPMTPPSPQRRPPRTPPSPEP-RN---PPRTPPSPIPPPPPRL 198
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGXGXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMGXTXSXX 504
G G G GG G GG G + G G G G +GGG G +
Sbjct: 67 GGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGGNQGGGGGGGFNFNDI 126
Query: 503 AGV 495
G+
Sbjct: 127 GGL 129
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGX-GXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMGXTXSX 507
G G G GG G G NG G G S G G G + GGS G +
Sbjct: 21 GGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGSGFGGGNTC 80
Query: 506 XAG 498
+G
Sbjct: 81 GSG 83
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -2
Query: 683 GXGVGXREXGGXXVGXGGNGX-GXXXFLVGXSPXGXGEGXXFGXXXVRGGGSXMGXTXSX 507
G G G GG G G NG G G S G G G + GGS G +
Sbjct: 21 GGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGSGFGGGNTC 80
Query: 506 XAG 498
+G
Sbjct: 81 GSG 83
>Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical
protein T16G1.8 protein.
Length = 365
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 535 PPPLTXXSPXXXPSPXPXGXXP-TRNXXXPXPFPPXPTXXPP 657
PPPL S +P T + P PFPP P PP
Sbjct: 107 PPPLILPSSPSYVAPVSAPSYSLTPSISIPGPFPPAPLYVPP 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,997
Number of Sequences: 27780
Number of extensions: 229990
Number of successful extensions: 999
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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