Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L21
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   134   2e-32
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   134   2e-32
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   133   4e-32
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   8.4  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  134 bits (324), Expect = 2e-32
 Identities = 61/96 (63%), Positives = 73/96 (76%)
 Frame = +2

Query: 179 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRX 358
           LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHFRAPS+I  K VR 
Sbjct: 28  LLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRG 87

Query: 359 MIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMPA 466
           M+PHKT RG  AL  L    G PPPFD ++ VV+PA
Sbjct: 88  MLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPA 123



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +3

Query: 489 KXGRNYCHVSXLSHEIGWKYRDVVPKLEKQKK 584
           K GR YC V  LS E+GWKY D+V KLE+++K
Sbjct: 131 KPGRKYCTVGRLSSEVGWKYSDIVSKLEERRK 162



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 112 KAIVIDGRGHLLGRLAAVIAK 174
           K +VID +GHLLGRLA+V+AK
Sbjct: 6   KVVVIDAKGHLLGRLASVVAK 26


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  134 bits (324), Expect = 2e-32
 Identities = 61/96 (63%), Positives = 73/96 (76%)
 Frame = +2

Query: 179 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRX 358
           LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHFRAPS+I  K VR 
Sbjct: 28  LLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRG 87

Query: 359 MIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMPA 466
           M+PHKT RG  AL  L    G PPPFD ++ VV+PA
Sbjct: 88  MLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPA 123



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +3

Query: 489 KXGRNYCHVSXLSHEIGWKYRDVVPKLEKQKK 584
           K GR YC V  LS E+GWKY D+V KLE+++K
Sbjct: 131 KPGRKYCTVGRLSSEVGWKYNDIVAKLEERRK 162



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 112 KAIVIDGRGHLLGRLAAVIAK 174
           K +VID +GHLLGRLA+V+AK
Sbjct: 6   KVVVIDAKGHLLGRLASVVAK 26


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  133 bits (321), Expect = 4e-32
 Identities = 60/96 (62%), Positives = 73/96 (76%)
 Frame = +2

Query: 179 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRX 358
           LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHFRAPS+I  K VR 
Sbjct: 28  LLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRG 87

Query: 359 MIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMPA 466
           M+PHKT RG  AL  L    G PPPFD ++ +V+PA
Sbjct: 88  MLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPA 123



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +3

Query: 489 KXGRNYCHVSXLSHEIGWKYRDVVPKLEKQKK 584
           K  R YC +  LS E+GWKY+++V KLE+++K
Sbjct: 131 KPSRKYCTIGRLSSEVGWKYKNIVSKLEERRK 162



 Score = 33.9 bits (74), Expect = 0.032
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 112 KAIVIDGRGHLLGRLAAVIAK 174
           K ++ID +GHL+GRLA+ +AK
Sbjct: 6   KLVIIDAKGHLMGRLASTVAK 26


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  IPTHYREFLKILAIFVLKRY 70
           +P  Y EF KIL I+  K Y
Sbjct: 184 LPAEYEEFYKILCIYFPKNY 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,114
Number of Sequences: 5004
Number of extensions: 54240
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)