Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L21
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906...   122   4e-28
07_01_0071 - 522920-523063,524125-524212,524289-524677                120   2e-27
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769...    76   4e-14
11_04_0056 + 12942802-12942920,12943022-12943115                       31   0.94 

>03_06_0010 +
           30990002-30990273,30990372-30990488,30990581-30990668,
           30991505-30991648
          Length = 206

 Score =  122 bits (294), Expect = 4e-28
 Identities = 54/95 (56%), Positives = 67/95 (70%)
 Frame = +2

Query: 179 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRX 358
           LL G +VVVVRCE+I +SG   R K+K + FLRK  N  P+ GP HFR+P+KILW+TVR 
Sbjct: 32  LLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRG 91

Query: 359 MIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMP 463
           MIPHKT RG  AL  L  Y G PPP+D  + +V+P
Sbjct: 92  MIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIP 126



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 495 GRNYCHVSXLSHEIGWKYRDVVPKLEKQKKGQGVKKIAY 611
           G  YC +  LS E+GW Y D + +LE+++K +   K+AY
Sbjct: 137 GHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAY 173



 Score = 33.1 bits (72), Expect = 0.31
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 85  VVKMTGFSNKAIVIDGRGHLLGRLAAVIAK 174
           +V  +G     +V+D R H+LGRLA++IAK
Sbjct: 1   MVSGSGVCAPRVVVDARHHMLGRLASIIAK 30


>07_01_0071 - 522920-523063,524125-524212,524289-524677
          Length = 206

 Score =  120 bits (289), Expect = 2e-27
 Identities = 53/95 (55%), Positives = 66/95 (69%)
 Frame = +2

Query: 179 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRX 358
           LL G +VVVVRCE++ ISG   R K+K + FLRK  N  P+ GP HFRAPS+I W+TVR 
Sbjct: 32  LLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRG 91

Query: 359 MIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMP 463
           MIPHKT RG  AL  L  + G PPP+D  + +V+P
Sbjct: 92  MIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVP 126



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 495 GRNYCHVSXLSHEIGWKYRDVVPKLEKQKKGQGVKKIAY 611
           G  YC +  LS E+GW Y D + +LE+++K +   K+AY
Sbjct: 137 GHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAY 173



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +1

Query: 85  VVKMTGFSNKAIVIDGRGHLLGRLAAVIAK 174
           +V  +G   + +V+D R H+LGRLA+++AK
Sbjct: 1   MVSGSGLCTRRVVVDARHHMLGRLASLVAK 30


>03_06_0007 -
           30975910-30975921,30976660-30976747,30976850-30976966,
           30977081-30977154
          Length = 96

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +2

Query: 287 NVNPARGPFHFRAPSKILWKTVRXMIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMP 463
           N  P+ GP HFR+P+KILW+TVR MIPHKT RG  AL  L  Y    PP+D  + +V+P
Sbjct: 2   NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIP 60



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 495 GRNYCHVSXLSHEIGWKYRDVV 560
           G  YC +  LS E+GW Y D +
Sbjct: 71  GHKYCLLGQLSKEVGWNYYDTI 92


>11_04_0056 + 12942802-12942920,12943022-12943115
          Length = 70

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 380 RGXNALXXLXTYXGWPPPFDXRRXVVMP 463
           RG  AL  L  Y G PPP+D  + +V+P
Sbjct: 9   RGEAALARLKAYEGVPPPYDRTKRMVIP 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,579,120
Number of Sequences: 37544
Number of extensions: 430794
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)