Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L21
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   126   2e-29
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   126   2e-29
Z81107-7|CAD31662.1|  119|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF000263-16|AAG00014.1|  119|Caenorhabditis elegans Hypothetical...    29   3.4  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    29   3.4  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  126 bits (304), Expect = 2e-29
 Identities = 57/96 (59%), Positives = 70/96 (72%)
 Frame = +2

Query: 179 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRX 358
           LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK CN+NPARG FH+RAP KI W+TVR 
Sbjct: 28  LLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRG 87

Query: 359 MIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMPA 466
           M+PHKT RG  AL  L  Y G P  +   + +  P+
Sbjct: 88  MLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPS 123



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +3

Query: 498 RNYCHVSXLSHEIGWKYRDVVPKLEKQKKGQGVKKIAYXXKXKKIPQXCXXKXCPK 665
           R +C V  LSHE+GW+++DVV KLE ++K +G        K  K+         PK
Sbjct: 133 RKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPK 188



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 23/25 (92%)
 Frame = +1

Query: 100 GFSNKAIVIDGRGHLLGRLAAVIAK 174
           G SN+AI+IDG+ HLLGRLA+++AK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAK 26


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  126 bits (304), Expect = 2e-29
 Identities = 57/96 (59%), Positives = 70/96 (72%)
 Frame = +2

Query: 179 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKXCNVNPARGPFHFRAPSKILWKTVRX 358
           LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK CN+NPARG FH+RAP KI W+TVR 
Sbjct: 28  LLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRG 87

Query: 359 MIPHKTXRGXNALXXLXTYXGWPPPFDXRRXVVMPA 466
           M+PHKT RG  AL  L  Y G P  +   + +  P+
Sbjct: 88  MLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPS 123



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +3

Query: 498 RNYCHVSXLSHEIGWKYRDVVPKLEKQKKGQGVKKIAYXXKXKKIPQXCXXKXCPK 665
           R +C V  LSHE+GW+++DVV KLE ++K +G        K  K+         PK
Sbjct: 133 RKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPK 188



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 23/25 (92%)
 Frame = +1

Query: 100 GFSNKAIVIDGRGHLLGRLAAVIAK 174
           G SN+AI+IDG+ HLLGRLA+++AK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAK 26


>Z81107-7|CAD31662.1|  119|Caenorhabditis elegans Hypothetical
           protein R07H5.11 protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 161 QSSPRVLLEGNKVVVV---RCEQINISGNFFRNKLKLMSFLRKXCN 289
           +SSP   L+ ++++V+   R E I + G FF+N+ K  S   K CN
Sbjct: 57  ESSPTTHLQPHRIMVLSRNRYESIGLRGKFFKNQKKCYS---KNCN 99


>AF000263-16|AAG00014.1|  119|Caenorhabditis elegans Hypothetical
           protein T08B2.4 protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 161 QSSPRVLLEGNKVVVV---RCEQINISGNFFRNKLKLMSFLRKXCN 289
           +SSP   L+ ++++V+   R E I + G FF+N+ K  S   K CN
Sbjct: 57  ESSPTTHLQPHRIMVLSRNRYESIGLRGKFFKNQKKCYS---KNCN 99


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 428 PPFDXRRXVVMPAGPTCLLSEXWP*LLSCKXT 523
           PP D    +++P  P   L E WP L S + T
Sbjct: 790 PPVDPNARLLVPPPPVARLEENWPLLASARGT 821


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,379,476
Number of Sequences: 27780
Number of extensions: 329784
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)