Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_L20
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 31 1.5
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 31 1.5
08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438... 30 2.0
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940... 30 2.7
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 30 2.7
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 6.1
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 29 6.1
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 29 6.1
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 139 SFYASWLRREVSDHQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 273
SF S+L +E++ + +PS Y+R LG GNGG + + D
Sbjct: 708 SFARSYLVQELNIAETRLVPLNSPSDYARALELGSGNGGVDAIID 752
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -2
Query: 391 PGXNTLVP*ACPVSLPRSSLKNSPVVTTFTKKSLVALSQSPEDLPSP 251
P + + AC S+ R SLK SPVV+ +++ L S SP D SP
Sbjct: 405 PSDSETMQSACRSSIDRLSLKGSPVVSGLSQRQL--SSDSPLDKLSP 449
>08_02_0725 -
20442988-20443180,20443268-20443540,20443642-20443853,
20443935-20444247,20444334-20444441,20444537-20444643,
20444743-20444781
Length = 414
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 313 TTFTKKSLVALSQSPEDLPSPHFPVPSDKVV 221
TTF +++ A S +PE+LP P + D+VV
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVV 263
>04_04_1570 -
34492944-34493159,34493668-34493842,34493964-34494068,
34494454-34494623,34494760-34494830,34494950-34496799,
34497003-34497052,34497147-34497263
Length = 917
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 52 CLEQRNCHNSKCIPRVLLSRCTPCMRERSSFYASWLRREVSDHQPIFKVSPTPSRYSRLC 231
C EQ N +NS+C+ S T + +SW + +++ I K P S++
Sbjct: 278 CCEQSNSNNSRCLDSASTSTLTDSSLDGHYTDSSWNFSDDTENLLIDKNECPPCVQSKVT 337
Query: 232 HL-GQGNGGREG 264
L G GG EG
Sbjct: 338 DLRGSKCGGSEG 349
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 29 ESLRFDILVSSSETVTIQNVFQGCCYPAALLVC 127
ES+ + +SSE + N+F GCC+ + LVC
Sbjct: 348 ESMIMQRVTASSERIIFHNMF-GCCHNSTTLVC 379
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 151 SWLRREVSDHQP-IFKVSPTPSRYSRLCHLGQGNGGREGLRDFGRERP 291
SWL REV H P F + P P S+ GQ N +E + F P
Sbjct: 94 SWLWREVLKHNPDAFTIKPRPLPPSQDPLEGQENQNQEHEKHFAHVAP 141
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 28.7 bits (61), Expect = 6.1
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +3
Query: 240 TGKWGEGRSSGLWERATK-------DFLVKVVTTGEFFNDDRGKLTGQAYGTRV-LXPGG 395
TG+ GR+ LW+RAT DF+ K+VT D +Y +RV P G
Sbjct: 87 TGRMSYGRAVPLWDRATNEVASFATDFVFKIVTPDNVARGDGMAFFLSSYPSRVPPKPSG 146
Query: 396 DS 401
S
Sbjct: 147 QS 148
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 106 SRCTP-CMRERSSFYASWLRREVSDHQPIFKVSPTPS 213
+ CTP RSS YA+ L R S + KVSPTPS
Sbjct: 234 AHCTPRTSSRRSSCYATPLCRTPSKVELYQKVSPTPS 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,331,164
Number of Sequences: 37544
Number of extensions: 393745
Number of successful extensions: 1012
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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