Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_L16
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 37 0.018
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 34 0.13
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 34 0.13
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 34 0.17
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 33 0.22
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 31 0.89
03_01_0249 - 1935355-1935827,1936129-1936330 31 1.2
12_01_0675 + 5759641-5759722,5760247-5760291,5760690-5760775,576... 30 2.1
02_05_1323 + 35700147-35701649 30 2.1
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 29 3.6
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 29 4.8
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588... 29 6.3
09_04_0448 + 17692650-17692970,17693461-17693811 28 8.3
03_05_0992 + 29528126-29529931 28 8.3
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 37.1 bits (82), Expect = 0.018
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 180 GQDFE----DHRVLSADWPDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLAGAN 347
G DF+ D R + P F PFGQ+PVL + +S AI RY+ KY GA+
Sbjct: 30 GLDFDLVPVDLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINRYIATKYKAEGAD 89
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 222 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKY 329
PD + PFGQ+P +S AICRY+ RK+
Sbjct: 44 PDHLARNPFGQVPAFQDGDLMLFESRAICRYILRKH 79
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 222 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKY 329
P+ + PFG++PVL QS AI RY+ RKY
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIARYIFRKY 79
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 195 DHRVLSADWPDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLAGAN 347
D + + P+ + PFGQMP +S A+ RY+ RKY + AN
Sbjct: 35 DFKAMEHKSPEHLKRNPFGQMPAFQDGDLLLFESRAVGRYILRKYKTSEAN 85
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 222 PDFKPKTPFGQMPVLVIDGKQYA-QSTAICRYLGRK 326
PD + PFGQ+P L DG + +S AIC+Y+ RK
Sbjct: 44 PDHLARNPFGQVPALQ-DGDLFLWESRAICKYVCRK 78
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 31.5 bits (68), Expect = 0.89
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 195 DHRVLSADWPDFKPKTPFGQMPVLVIDGKQYA-QSTAICRYLGRKY 329
D V+ P+ + PFGQ+P DG Y +S AI +Y+ RKY
Sbjct: 35 DFTVMEHKSPEHLKRNPFGQIPAFQ-DGDLYLFESRAIGKYILRKY 79
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 222 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLAG 341
P F PFGQ+P +S AICRY+ +Y +G
Sbjct: 45 PSFLKLQPFGQVPAFKDSLTTVFESRAICRYICDQYADSG 84
>12_01_0675 +
5759641-5759722,5760247-5760291,5760690-5760775,
5760888-5760959,5761210-5761263,5761385-5761460,
5761778-5761839,5762174-5762233,5762331-5762432
Length = 212
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 159 RMLLAYGGQDFEDHRVLSADWPDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKY 329
R++L G D+E V PD++ P +P LV + S AI YL KY
Sbjct: 21 RIVLNLKGVDYEYKSVNPRTDPDYEKINPIKYIPALVDGDLVVSDSLAIALYLEDKY 77
>02_05_1323 + 35700147-35701649
Length = 500
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 25 IGNSLRFXCFASAIEPSARRLTTIN*KCLRLCTITSLARLSGRAA 159
+ N L + A+ SARR+ +N C +C+ TSL GRAA
Sbjct: 124 VSNGLIHAYASCALLCSARRVFDVNVSCRDVCSWTSLLTAYGRAA 168
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 222 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGR---KYGLAGANDEEAFEIDQNVEF 386
P+F P G++PVL +S AI RY+ R L G++ + I+Q ++F
Sbjct: 67 PEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDF 124
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 222 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKY 329
P+ + PFG++P L +S AI +Y+ RKY
Sbjct: 44 PEHVERNPFGKIPALQDGDLVLFESRAIAKYILRKY 79
>06_01_0786 -
5881178-5881303,5881523-5881627,5882078-5882169,
5882267-5882336,5882639-5882724,5882916-5883017,
5883375-5883597,5883693-5883758,5883896-5883986,
5884019-5884057,5885401-5885548,5885623-5885715,
5885782-5885886,5886645-5886826,5886912-5887084
Length = 566
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 245 RSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLA 135
R LW+E RP G AV+ + A G PE A
Sbjct: 46 RLLWVETRPEEGGRAVLVKEAAEPGGDAVDVTPEGFA 82
>09_04_0448 + 17692650-17692970,17693461-17693811
Length = 223
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QMPVLVIDGKQYAQSTAICRYL 317
++PVLV DGK A+ST I Y+
Sbjct: 55 KVPVLVHDGKPLAESTVIVEYI 76
>03_05_0992 + 29528126-29529931
Length = 601
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -2
Query: 233 LEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVMVH---NLRHFQFIVVSRRALGSI 63
L RP ++ +L S+ + A+ E L E+ +LRH+ ++ +G +
Sbjct: 152 LSARPNHDHPSLFLSLLESLAKTGHVAVAEQLVEELQPRLPLSLRHYTALLYGWCRMGKL 211
Query: 62 AEAKH 48
EAKH
Sbjct: 212 DEAKH 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,477
Number of Sequences: 37544
Number of extensions: 332539
Number of successful extensions: 1051
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -