Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L10
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   150   3e-37
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   150   3e-37
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.6  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  150 bits (363), Expect = 3e-37
 Identities = 68/115 (59%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
 Frame = +2

Query: 74  IRQRKRFRNRPPVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 253
           ++  + F+ +P +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSI
Sbjct: 7   VQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63

Query: 254 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR-GRGD 415
           RGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR   GD
Sbjct: 64  RGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGD 118


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  150 bits (363), Expect = 3e-37
 Identities = 68/115 (59%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
 Frame = +2

Query: 74  IRQRKRFRNRPPVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSI 253
           ++  + F+ +P +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSI
Sbjct: 7   VQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63

Query: 254 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR-GRGD 415
           RGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR   GD
Sbjct: 64  RGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGD 118


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
 Frame = +3

Query: 648 PPPXXX--TXFXGXXGXPPPPPXXXGXXXKXXXXFFXGXXXXXPPPPP 785
           PPP     T        PPP P   G           G     PPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,556
Number of Sequences: 5004
Number of extensions: 50584
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)