Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L09
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    49   1e-06
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   3.9  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   8.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%)
 Frame = +1

Query: 247 RTLPLVRGIQPTRDLSRFVRWPKYIRIQRQKAVLXASSESAPS 375
           R+  + + IQP RDLSRFV+WP+YIR+QR++ +L    +  P+
Sbjct: 32  RSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPA 74



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 25/77 (32%), Positives = 34/77 (44%)
 Frame = +3

Query: 222 NPLFDKRPKNFAIGQGHSANSGLVQICKMAQVYPHPAPEGCTSXVV*KCPLRSTNLPRHW 401
           NPLF  RP++F IGQ       L +  K  +           +  + K P       +  
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRL-KVPPAIAQFQKTL 82

Query: 402 DKTTAKGLFKILEKYRP 452
           DK TA  +FK+L KYRP
Sbjct: 83  DKNTATQVFKLLNKYRP 99


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 286 DLSRFVRWPKYIRIQRQKAVLXASSESAPSDQPIYPDTGT 405
           D      WP Y R  R++++L  +S S P  QP Y    T
Sbjct: 105 DYGHSYEWP-YFRSLRRESMLYHTSGSYPESQPPYSSYST 143


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 271 IQPTRDLSRFVRWPKYIRIQRQKAVLXASSESAPSD 378
           IQ  R LS  +R+P++IR++  K    AS+ S  +D
Sbjct: 733 IQDDRGLS--IRFPRFIRVRSDKGPEDASTNSILAD 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,028
Number of Sequences: 5004
Number of extensions: 61522
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)