Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L09
         (947 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    49   4e-06
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    49   4e-06
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    49   4e-06
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    49   4e-06
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 247 RTLPLVRGIQPTRDLSRFVRWPKYIRIQRQKAVLXASSESAPS 375
           R   + + IQP +D++RFV+WPKYIR+QRQ A+L    +  P+
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 183



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 222 NPLFDKRPKNFAIGQ 266
           NPLF+KR +NF IGQ
Sbjct: 133 NPLFEKRARNFNIGQ 147


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 247 RTLPLVRGIQPTRDLSRFVRWPKYIRIQRQKAVLXASSESAPS 375
           R   + + IQP +D++RFV+WPKYIR+QRQ A+L    +  P+
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 183



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +3

Query: 222 NPLFDKRPKNFAIGQGHSANSGLVQICKMAQVYPHPAPEGCTSXVV*KCPLRSTNLPRHW 401
           NPLF+KR +NF IGQ       + +  K  + Y     +        K P          
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPK-YIRLQRQSAILQKRLKVPPTINQFRTAL 191

Query: 402 DKTTAKGLFKILEKYRP 452
           D  +A+  FK+L+KYRP
Sbjct: 192 DSHSARQAFKLLDKYRP 208


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 247 RTLPLVRGIQPTRDLSRFVRWPKYIRIQRQKAVLXASSESAPS 375
           R   + + IQP +D++RFV+WPKYIR+QRQ A+L    +  P+
Sbjct: 38  RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 80



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 28/109 (25%), Positives = 41/109 (37%)
 Frame = +3

Query: 222 NPLFDKRPKNFAIGQGHSANSGLVQICKMAQVYPHPAPEGCTSXVV*KCPLRSTNLPRHW 401
           NPLF+KR +NF IGQ       + +  K  + Y     +        K P          
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPK-YIRLQRQSAILQKRLKVPPTINQFRTAL 88

Query: 402 DKTTAKGLFKILEKYRPXXXXXXXXXXXXXXXX*GGQKDXPPTKKPHNI 548
           D  +A+  FK+L+KYRP                    K    TK+P+ +
Sbjct: 89  DSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTV 137


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 247 RTLPLVRGIQPTRDLSRFVRWPKYIRIQRQKAVLXASSESAPS 375
           R   + + IQP +D++RFV+WPKYIR+QRQ A+L    +  P+
Sbjct: 38  RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 80



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +3

Query: 222 NPLFDKRPKNFAIGQGHSANSGLVQICKMAQVYPHPAPEGCTSXVV*KCPLRSTNLPRHW 401
           NPLF+KR +NF IGQ       + +  K  + Y     +        K P          
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPK-YIRLQRQSAILQKRLKVPPTINQFRTAL 88

Query: 402 DKTTAKGLFKILEKYRP 452
           D  +A+  FK+L+KYRP
Sbjct: 89  DSQSARQAFKLLDKYRP 105


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 39/136 (28%), Positives = 47/136 (34%), Gaps = 9/136 (6%)
 Frame = +2

Query: 524 SNQEAPQHPDPGXTQSPTGSKXKKXXLGXXPPP*CLIPLGAWFSXPAXRLXPXKWAVPLP 703
           S   APQ P  G T +P          G   PP    P  A  + PA    P     P P
Sbjct: 288 SGTSAPQPPPRGSTAAP----------GTRAPPATRAP-PATRAPPATTRAPPATTRPAP 336

Query: 704 AXXQGAKXPAP---GXPLXPPQXXAHCXTSYQIVE----SG*TP--PSXLXXVVGXPSXP 856
           A     + P     G P   PQ  AH   SY        S  +P  PS        P+ P
Sbjct: 337 ASQPPVREPETPDSGYPSPAPQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEP 396

Query: 857 XFNQXPPRXXPQATGG 904
            ++  PP    Q +GG
Sbjct: 397 AYSVPPPAKPEQPSGG 412


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
 Frame = +2

Query: 677 PXKWAVPLPAXXQGAKXPAPGXPLXPPQXXAHCXTSYQIVESG*TPPSXLXXVVGXPSXP 856
           P   + P P   Q +  P P  P  PP    HC  +   VE   TPPS        P  P
Sbjct: 748 PRSASTPQPIQQQQSSIPPPPPPPPPP----HCEPTMVHVEF--TPPSTSSVPPPPPPLP 801

Query: 857 XFNQ-XPPRXXPQATGG 904
             +   PP   P   GG
Sbjct: 802 PISSGAPPPPPPPPPGG 818


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
 Frame = +2

Query: 677 PXKWAVPLPAXXQGAKXPAPGXPLXPPQXXAHCXTSYQIVESG*TPPSXLXXVVGXPSXP 856
           P   + P P   Q +  P P  P  PP    HC  +   VE   TPPS        P  P
Sbjct: 748 PRSASTPQPIQQQQSSIPPPPPPPPPP----HCEPTMVHVEF--TPPSTSSVPPPPPPLP 801

Query: 857 XFNQ-XPPRXXPQATGG 904
             +   PP   P   GG
Sbjct: 802 PISSGAPPPPPPPPPGG 818


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +3

Query: 690 PXPSRXWXKGPSXPPPVAXCXPXXNXPIALPPTKLW-SLVEPRPPFSXXS 836
           P P      GP  PP      P    P A PP  L+ S  +P+P F+  S
Sbjct: 141 PRPHFPGPPGPHRPPEHYPGPPRPQAPAAPPPKSLFPSAQKPKPLFAAAS 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,955,749
Number of Sequences: 27780
Number of extensions: 405434
Number of successful extensions: 1008
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)