Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L08
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    68   8e-12
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    38   0.008

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 37/87 (42%), Positives = 49/87 (56%)
 Frame = +3

Query: 90  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 269
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 270 YHQKMKVNLRNHYKNKKYKPLEFKSQE 350
             QK +  LR  YK K   PL+ + ++
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKK 87



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 18/89 (20%)
 Frame = +1

Query: 247 LSHVFTLCITRR*RSILETTTKTRNTSL*NLRAKKTRAMRKALTKH-------------- 384
           ++ V T+ I+++ R+ L    K ++    +LR KKTRA+R+ LTKH              
Sbjct: 54  IARVLTV-ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSM 112

Query: 385 ----EAKIKTRKEIRKKSLFPPRVYAVKA 459
               +  +KT +E +++  FP R YA+KA
Sbjct: 113 VAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +3

Query: 78  VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 257
           VTV M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 258 VY 263
            Y
Sbjct: 163 AY 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,785
Number of Sequences: 37544
Number of extensions: 222487
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)