Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_L05
(1168 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.75
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.76
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.8
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 3.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 6.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 6.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 6.6
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 579 FXPPPPPPPP 550
F PPPPPPPP
Sbjct: 944 FPPPPPPPPP 953
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 574 PPPPPPPPXXGXGXGG 527
PPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 25.4 bits (53), Expect(2) = 0.75
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 571 PPPPPPPXXGXGXGGG 524
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 22.6 bits (46), Expect(2) = 0.75
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 574 PPPPPPPP 551
PPPPPP P
Sbjct: 907 PPPPPPLP 914
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 468 GGAPPPXXWGXPPFFXXXAPPPXPXPXXGGGGGG 569
GG PPP PP PPP P P GG
Sbjct: 759 GGPPPPPP---PPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 574 PPPPPPPPXXGXG 536
PPPPPPPP G
Sbjct: 776 PPPPPPPPAVSAG 788
Score = 27.1 bits (57), Expect(2) = 0.76
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -1
Query: 571 PPPPPPPXXGXGXGGGAXXKKKGGXPQXXGGGAPPXXKNPXGEKTP 434
PPPPPPP G G P GG+ P E P
Sbjct: 761 PPPPPPP---PGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 573 PPPPPPPP 550
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 574 PPPPPPPPXXGXG 536
PPPPPPP G G
Sbjct: 762 PPPPPPPGVAGAG 774
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 573 PPPPPPPP 550
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 21.0 bits (42), Expect(2) = 0.76
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 574 PPPPPP 557
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 3.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 579 FXPPPPPPPP 550
+ PPPPPPPP
Sbjct: 187 YNPPPPPPPP 196
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 574 PPPPPPPP 551
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 112 GLPKFVFFPPKISLK-REIFPP 50
GL +FVFFP +S K RE+ PP
Sbjct: 126 GLCRFVFFPVLLSYKRREMLPP 147
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 3.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 579 FXPPPPPPPP 550
+ PPPPPPPP
Sbjct: 368 YSPPPPPPPP 377
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 573 PPPPPPPP 550
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 573 PPPPPPPP 550
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 573 PPPPPPPP 550
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 574 PPPPPPPP 551
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,267
Number of Sequences: 5004
Number of extensions: 21309
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -