Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L04
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           33   0.23 
03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.92 
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    31   1.2  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.8  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   6.5  
03_02_0390 + 8056006-8057502                                           28   8.5  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 208 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPG 378
           QP     Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   P P  G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445

Query: 379 ARG 387
           A G
Sbjct: 446 AGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 229 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 378
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>03_01_0149 -
           1175689-1176258,1176345-1176509,1176631-1177539,
           1178179-1178378,1178505-1178605,1178747-1179369,
           1179451-1179546,1179637-1179798,1179889-1180068,
           1180173-1180323,1180408-1180641,1180753-1180913,
           1181041-1181163,1181261-1181421,1181655-1181877,
           1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -1

Query: 865 GGGXXEGXXKKXNRLXPGGWGGXX*XXKTXPQLPPGP 755
           GGG  E    K  RL  GG GG     +  P LPP P
Sbjct: 144 GGGGGEWRDGKRPRLASGGVGGPRQEWRRRPMLPPPP 180


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +1

Query: 190 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDRPQGRPYF 357
           P P+  QP  G  Y P      Y   P ++     P    Y P   G  Y  +PQG+PY 
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286

Query: 358 KPTPF 372
            P P+
Sbjct: 287 PPQPY 291


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 205 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 372
           A+ T  +G  P ++  +   PP     D  P+ + Y+P  +  YY D P    Y+ P P 
Sbjct: 28  AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86

Query: 373 PGARGG 390
           P   GG
Sbjct: 87  PYYGGG 92


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +1

Query: 160 ENADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRP 339
           ++ D V   +   F A+PT  N  + +    Y+       + +GNG +    G +  +  
Sbjct: 289 DDGDEVNAKEQFEFVAEPTTANSKDCVGTHEYLAPELVSGSGHGNGVDWWAFGVFLYELV 348

Query: 340 QGRPYFK 360
            GR  FK
Sbjct: 349 YGRTPFK 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,944,777
Number of Sequences: 37544
Number of extensions: 450014
Number of successful extensions: 1459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)