Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L03
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654...    29   4.0  

>04_01_0500 -
           6540769-6541482,6541819-6541877,6541965-6542064,
           6542113-6542322,6542507-6542765,6544022-6544215
          Length = 511

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -3

Query: 675 GEAGRGAPKPXRLSPGVGGXIXXXKXXPPSPLDLE 571
           GE G G P P    P  G         PP PLDLE
Sbjct: 24  GERGAGEPPPPLPPPPPGPLQRRSSLPPPPPLDLE 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,324,986
Number of Sequences: 37544
Number of extensions: 314526
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)