Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_L02
         (1093 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.49 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.49 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.0  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   8.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 23/91 (25%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
 Frame = +1

Query: 172 PXPPPKKFXXLPXPKTTXPXGAXPPPPP-XGXGGGXRPPXTXXXXXXXXXXXXXXXXXXX 348
           P PPP+       P       A PPPPP      G +PP                     
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398

Query: 349 XXPGGXGXXNNTTXSLXXXPAXPP-PPXXPP 438
             P      N +  S    P  P  PP  PP
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
 Frame = +1

Query: 172 PXPPPKKFXXLPXPKT--TXPX-----GAXPPPPPXGXGGGXRPP 285
           P PPP      P P      P      G  PPPPP G  G   PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +1

Query: 172 PXPPPKKFXXLPXPKTTXPX--GAXPPPPP 255
           P PPP      P P    P   GA PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +1

Query: 172 PXPPPKKFXXLPXPKTTXPXGAXPPPPPXGXGGGXRPP 285
           P P P     +P P         PPPPP   G G  PP
Sbjct: 742 PTPAPAPIP-VPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 172  PXPPPKKFXXLPXPKTTXPXGAXPP--PPP 255
            P PPP     +P P +  P  A PP  PPP
Sbjct: 1705 PTPPPPPM-SVPPPPSAPPMPAGPPSAPPP 1733


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 232 GAXPPPPPXGXGGGXRPP 285
           G   PPPP G G G  PP
Sbjct: 125 GYTAPPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,622
Number of Sequences: 5004
Number of extensions: 10782
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)