Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_K20
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 137 1e-32
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 116 3e-26
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 29 5.4
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 5.4
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 7.2
AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical ... 28 7.2
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 137 bits (331), Expect = 1e-32
Identities = 65/87 (74%), Positives = 74/87 (85%)
Frame = +1
Query: 322 RGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 501
+GRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPY
Sbjct: 82 QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPY 141
Query: 502 MSSPCHIEVCLSEREDAVARVAPTDDA 582
MSSPCHIEV L+E+ED V++ PTDDA
Sbjct: 142 MSSPCHIEVILAEKEDVVSK--PTDDA 166
Score = 87.8 bits (208), Expect = 8e-18
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +3
Query: 153 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQG 326
VHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQG
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQG 83
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2
Query: 92 YSREPDNPAKSCKARGSNLR 151
YSR P+N KSCKARGS+LR
Sbjct: 6 YSRAPENSTKSCKARGSDLR 25
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 116 bits (278), Expect = 3e-26
Identities = 56/75 (74%), Positives = 63/75 (84%)
Frame = +1
Query: 358 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 537
L LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66 LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125
Query: 538 EREDAVARVAPTDDA 582
E+ED V++ PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 153 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 272
VHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2
Query: 92 YSREPDNPAKSCKARGSNLR 151
YSR P+N KSCKARGS+LR
Sbjct: 6 YSRAPENSTKSCKARGSDLR 25
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 625 FDAQAFSWKAFSSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 494
F + A+ +A ++L H+ L HL + D+LRC R T+C G
Sbjct: 344 FGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 331 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 492
W K+ + LL AE++ + D+D++V I + P L R +R +G
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547
Query: 493 NPYMSSPCHIEVCLSER 543
NP+ SPC ++ S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -3
Query: 520 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 392
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
protein R134.1 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 383 DSAFLNNCKRNSADFLGQRPLCCAKLLCL-STATNAAVEATE-WNTLFLFNHVFEVTNST 210
D A+L+ +RN + + PL C+ + C+ STAT A ++ ++L+ NST
Sbjct: 328 DKAYLDYMQRNILNVVKLPPLNCSTVDCVSSTATGMGAYARHLFDVVYLYGIALTRVNST 387
>AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical
protein Y50D4A.1 protein.
Length = 821
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 344 DFLGQRPLCCAKLLCLSTATNAAVEATEWNTL 249
D L RP C K+ +S T++ +E EW+ L
Sbjct: 120 DGLPHRPACTIKMRAISMMTSSFMENLEWSRL 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,622,848
Number of Sequences: 27780
Number of extensions: 338234
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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