Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_K17
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.084
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   6.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +2

Query: 335 PXPPPPPXPXRGGXXXPPXKKKKXXXXPXPPPP 433
           P P PPP P  GG   PP         P PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +1

Query: 286 PXXPXXXGVKXXXXXPPXXAPPPXPXEGGXXPPP 387
           P  P    +       P   PPP P  GG  PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
 Frame = +2

Query: 332 PPXPPPP---PXPXRGGXXXPPXKKKKXXXXPXPPPP 433
           PP PPP    P P       PP         P PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 332 PPXPPPPPXPXRGGXXXPP 388
           PP PPPPP     G   PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 701 PPXXXXXXXPXXXPPXPPXPPPTPXXXXAPQKTHPP 808
           PP       P   P   P PPP P     P    PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 332 PPXPPPPPXPXRGG 373
           PP PPPPP    GG
Sbjct: 776 PPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.084
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +2

Query: 341 PPPPPXPXRGGXXXPP-XKKKKXXXXPXPPPP 433
           PPPPP P R     PP          P PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 332 PPXPPPPPXPXRGGXXXPPXKKKKXXXXPXPPPP 433
           PP PPPP     G    PP  +      P PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRS----APPPPPP 366



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +2

Query: 335 PXPPPPPXPXRGGXXXPPXKKKKXXXXPXPPPP 433
           P PPPP      G   PP    +    P  PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 335 PXPPPPPXPXRGGXXXPPXKKKKXXXXPXPPPP 433
           P PPPPP     G              P PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +2

Query: 335 PXPPPPPXPXRGGXXXPP-XKKKKXXXXPXPPPP 433
           P  PPP  P R     PP     +    P P PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPF 436
           PPPP     G   PP           PPPPF
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPF 342



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP   + G   PP           PPPP    P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEP 242



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP     G   PP           PPPP    P
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 255



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP     G   PP           PPPP    P
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP     G   PP           PPPP    P
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 281



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP     G   PP           PPPP    P
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 294



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP     G   PP           PPPP    P
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 307



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP     G   PP           PPPP    P
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 320



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 344 PPPPXPXRGGXXXPPXKKKKXXXXPXPPPPFXWXP 448
           PPPP     G   PP           PPPP    P
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 332 PPXPPPPP 355
           PP PPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 740 PPXPPXPPP 766
           PP PP PPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 1.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 335 PXPPPPPXP 361
           P PPPPP P
Sbjct: 236 PAPPPPPPP 244



 Score = 22.6 bits (46), Expect(2) = 2.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 752 PXPPPTPXXXXAPQKTH 802
           P PPP P     PQ T+
Sbjct: 236 PAPPPPPPPTLPPQSTN 252


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 332 PPXPPPPPXPXRGGXXXPPXKKKKXXXXPXPPPP 433
           PP  PPPP P  G    PP +       P PPPP
Sbjct: 5   PPGNPPPPPPPPG--FEPPSQ------PPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 740 PPXPPXPPPTPXXXXAPQKTHPP 808
           PP  P PPP P     P +  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 740 PPXPPXPPPTPXXXXAPQKTHPP 808
           P  PP PPP P      Q   PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 6.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 740 PPXPPXPPP 766
           PP PP PPP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.0 bits (42), Expect(2) = 6.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 749  PPXPPPTPXXXXAPQKTHPP 808
            PP PPP P    A  K   P
Sbjct: 946  PPPPPPPPLVSAAGGKFVSP 965


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 728 PXXXPPXPPXPPPTPXXXXAPQKTHPP 808
           P   PP P  PPP+P          PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,529
Number of Sequences: 5004
Number of extensions: 21914
Number of successful extensions: 230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)