Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_K11
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   141   1e-34
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    57   4e-09
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    36   0.006
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    29   0.88 
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   4.7  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    27   4.7  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   4.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.2  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  141 bits (341), Expect = 1e-34
 Identities = 66/88 (75%), Positives = 75/88 (85%)
 Frame = +2

Query: 545 PLESRSLGVVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLV 724
           P+    LG VVDALGNPIDGKGPI T  R RV +KAPGI+PR SV EPMQTG+KA+DS+V
Sbjct: 126 PVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMV 185

Query: 725 PIGRGQRELIIGDRQTGKTXLAIDTIIN 808
           PIGRGQRELIIGDRQTGKT +A+DTI+N
Sbjct: 186 PIGRGQRELIIGDRQTGKTAIALDTILN 213



 Score =  133 bits (322), Expect = 3e-32
 Identities = 63/92 (68%), Positives = 76/92 (82%)
 Frame = +1

Query: 319 ADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLI 498
           A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+FGND+L+
Sbjct: 51  AQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLV 110

Query: 499 KEGDIVKRTGAIVDVPVGEQILGRGSRCFG*P 594
           +EG++VKRT  IVDVPVGE +LGR     G P
Sbjct: 111 REGEVVKRTRHIVDVPVGEALLGRVVDALGNP 142



 Score = 32.7 bits (71), Expect = 0.071
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 835 KKKXLYCIYVAIGQKRS 885
           + K LYC+YVA+GQKRS
Sbjct: 223 ESKKLYCVYVAVGQKRS 239


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 29/96 (30%), Positives = 48/96 (50%)
 Frame = +2

Query: 539 TFPLESRSLGVVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDS 718
           + P+   +LG +++ +G P+D +GPI       +   AP    + +  E ++TGIK VD 
Sbjct: 130 SIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDL 189

Query: 719 LVPIGRGQRELIIGDRQTGKTXLAIDTIINXSXSQG 826
           L P  RG +  + G    GKT    + I N + + G
Sbjct: 190 LAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG 225



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 469 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRGSRCFG*PY*RQG 609
           + + G + L++ G  V  TG+ + +PVG   LGR     G P   +G
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERG 153


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 545 PLESRSLGVVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQTGIKAVDS 718
           P+    LG V +  G PID KGP +  +   + I    I P  R+   E +QTGI ++D 
Sbjct: 99  PVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDG 156

Query: 719 LVPIGRGQR 745
           L  I RGQ+
Sbjct: 157 LNSIARGQK 165


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = -2

Query: 600 SIGLPKASTTTPKDLLSNGNVYDSTSTLDNISFLDKLVITKYYHTHIVRFQVKGHSLET* 421
           +I +PK     P+D+ S+ N+      ++ +  L  L IT+      V F++KG  +E  
Sbjct: 196 AIDIPKVRRPIPQDVNSDNNLKKLEQEMEAMKMLKPLRITQ---PEGVNFRIKGRYIEWQ 252

Query: 420 GELHHLLSLDVLQAINTSDTITN 352
               H +  +  + I  SD + N
Sbjct: 253 NFCFH-IGFNYREGIVLSDVVFN 274


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 402 LSLDVLQAI-NTSDTITNAQDTTSLF*ISPWARLPRILSSRMV 277
           +S +++Q + N    IT++ D  + + IS W R+ R+L S  V
Sbjct: 580 VSQELIQILGNIQMGITDSDDPQASYLISAWGRICRVLGSDFV 622


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 596 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG 775
           +D K PI+T  +        G I  V + E     IK   ++VPI   + E  +  R   
Sbjct: 125 VDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIE 184

Query: 776 KTXLAIDTIINXS 814
           K  + +DT    S
Sbjct: 185 KNGI-LDTCTQLS 196


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 633 IRDFVSIGPLPSIGLPKA-STTTPKDL-LSNGNVYDSTSTLDNISFLD 496
           +RD  SI    S+ +PK+ S TT K L LSNG +  S  + D+    D
Sbjct: 285 LRDRRSINRQSSLSIPKSTSETTRKTLALSNGGIDQSRVSSDSFKVDD 332


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 600 SIGLPKAST--TTPKDLLSNGNVYDSTSTLDNISFLDKLVIT 481
           S+GL  +S   +     L  GN+Y+STS  + +S LD   IT
Sbjct: 32  SVGLISSSNLESCQSSPLEVGNIYNSTSASEILSTLDAKYIT 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,161
Number of Sequences: 5004
Number of extensions: 69770
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)