Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_K10
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    33   0.075
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   3.7  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = -1

Query: 280 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAPRASTNAKTKLKIRTKFILPKFYSA 101
           AIA P +I+P  ++RP  S+F+KS      A + +P     A+TK+ +          SA
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP--LDIARTKIILFPISSSSYLSSA 259

Query: 100 GEFKNSKYKYRSTRTLR 50
            E   + +K     T+R
Sbjct: 260 SETSGNSHKKFKPLTIR 276


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 452 GGPSNILSNIWTTTGXWPFSK---VTEVAILIIYLF*NYGKXLNNR--NXVMVSPLW 607
           G P++I+SNI+TTTG    S    V +  + + + F  YG     R  N   +S  W
Sbjct: 115 GKPTSIISNIYTTTGPAKVSNDYAVRDPGVAVDH-FDQYGPLKEGRSLNSAKISTQW 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,804
Number of Sequences: 5004
Number of extensions: 48013
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)