Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_K09
         (978 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.6  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +3

Query: 543 PSPPXPPAXARXPTPXPPXPXPXXSAPXXXPPXXXP 650
           PSP   P   +  +P  P   P    P   PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 10/36 (27%), Positives = 13/36 (36%)
 Frame = +3

Query: 570 ARXPTPXPPXPXPXXSAPXXXPPXXXPIXXSXPPPP 677
           ++ P+   P P P        P    P   S  PPP
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 579 PTPXPPXPXPXXSAP 623
           P P PP P P  S P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +1

Query: 631 GPXPXXPSXXPXPPPPPXXSP 693
           G     P   P PPPP    P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 649 PSXXPXPPPPPXXSPP 696
           P     PPPPP  S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 10/36 (27%), Positives = 13/36 (36%)
 Frame = -1

Query: 240 PFVRHHGADAEPHRERRGQQLGDQRSPPSPHPAGQT 133
           P   H    + PH +     +G    PP  H   QT
Sbjct: 323 PSQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQT 358


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 135 FVRLGAAMVASAGLRAAGHGVLDVARRQLRGAVQR 239
           FV LGA +       AAG  +  V    +RG  Q+
Sbjct: 91  FVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.139    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,615
Number of Sequences: 438
Number of extensions: 8118
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)