Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_K01
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +2

Query: 632 PXPXPPXXXXXXXXXXPXPXXXXXXPPPXXPPXPPP 739
           P P P             P      PPP  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 680 PXPXXXXXXPPPXXPPXPPPXXXXXPPPPXPP 775
           P P       P       PP     PPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 680 PXPXXXXXXPPPXXPPXPPPXXXXXPPPPXPP 775
           P P      P    PP P        PP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 558  PPPPPPXP 581
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 706 PPXPXPPXPP 735
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 559 PPPPPPXXXXP 591
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -2

Query: 646 GXXXGGGXXXXXXGGGXFXXXXGXGGGGG 560
           G    GG      GG         GGGGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,718
Number of Sequences: 438
Number of extensions: 11262
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)