Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J24
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...   126   6e-30
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    54   4e-08
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    36   0.008
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    36   0.010
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    33   0.072
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   3.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   6.2  

>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score =  126 bits (303), Expect = 6e-30
 Identities = 55/103 (53%), Positives = 69/103 (66%)
 Frame = +2

Query: 233 NYAPLPVALCRGEGVFVWDVXGKKYYDFLSPYSAVNQGHCHPRIIEAXKKQADNLTLVSR 412
           NY PLPV   + +G  VWD  G++Y DFLS YSAVNQGHCHP+IIEA  +QA  +TL SR
Sbjct: 27  NYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSR 86

Query: 413 AFXSDPLGKYXKYMTXLFGYDRLLPMXXGVEXR*QCCXIARXW 541
           AF +D  G + KY+T  FGY+ ++PM  G E     C +AR W
Sbjct: 87  AFYNDKFGPFAKYITEYFGYEMVIPMNTGAEAVETACKLARLW 129


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = +2

Query: 236 YAPLPVALCRGEGVFVWDVXGKKYYDFLSPYSAVNQGHCHPRIIEAXKKQADNLTLVSRA 415
           YA  PV   +GEG +++D  G+KY DF S  +  + GH HP +      Q   L   S  
Sbjct: 51  YARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLVHSSNL 110

Query: 416 FXSDP 430
           F ++P
Sbjct: 111 FYNEP 115


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 239 APLPVALCRGEGVFVWDVXGKKYYDFLSPYSAVNQGHCHPRIIEAXKKQADNL 397
           AP P+ +  G G  + DV G +Y DFL+  +A   GH +P I +A  +  D +
Sbjct: 49  APFPIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEI 101


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +2

Query: 248 PVALCRGEGVFVWDVXGKKYYDFLSPYSAVNQGHCHPRIIEAXKKQADNLTLVSRAFXSD 427
           P  + R +G  V+D       DF S   +   GH HP I    +K    L  +   F S 
Sbjct: 33  PKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLSP 92

Query: 428 PLGKYXKYMTXLF--GYDRLLPMXXGVE 505
           P+ +    ++ L   G D+ L +  G E
Sbjct: 93  PVVQLATELSDLLPDGLDKTLFLSTGGE 120


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 248 PVALCRGEGVFVWDVXGKKYYDFLSPYSAVNQGHCHPRIIEAXKKQADNLTLV-SRAFXS 424
           P  + R EGV+++   G +  D     +    GH +  +I+A  KQ++ +  + S  F +
Sbjct: 28  PPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYIHSMGFSN 87

Query: 425 DPLGK 439
           +P  K
Sbjct: 88  EPADK 92


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 161  VKLWLNKICH-LKKFS---SWKTNMXCRNYAPLPVALCRGEGVFVWDVXGKKYYDFLSPY 328
            VKLW  ++ H L+ FS   S  T++   ++AP+       + + +WD  G+    F    
Sbjct: 1203 VKLWDIRMNHSLQTFSTDNSGLTSLTVHSHAPVYATGSSNQSIKIWDTLGQNINTFRENP 1262

Query: 329  SAVNQ 343
              +NQ
Sbjct: 1263 RFLNQ 1267


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 77  RRHTL-LCWTVTLKQQRRHNSTVPYRKNFVKLWLNKICHLKKFSSW 211
           RR TL LC  + LK  R +N+ +     F+K++L +I + +  ++W
Sbjct: 101 RRATLQLCDGLCLKLFRLNNNFLAVTGTFLKIYLIRISNFQIVATW 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,779
Number of Sequences: 5004
Number of extensions: 47104
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)