Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J23
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.015
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.1 bits (67), Expect = 0.015
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = +2

Query: 767 GXPLPXPXPPXPP--PPXXXPPXPPXXPPPPXXP-XXPAXPPNSXXLPP 904
           G P P P P   P  P    PP P   PPP   P   P+  P+   + P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 27.1 bits (57), Expect = 0.24
 Identities = 15/55 (27%), Positives = 16/55 (29%)
 Frame = +2

Query: 725 EPXPPPPXXPPXPXGXPLPXPXPPXPPPPXXXPPXPPXXPPPPXXPXXPAXPPNS 889
           +P    P   P P   P        P P    PP  P   PP   P      P S
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPAS 69


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 624 IITCNKPVTNQPIXXIL 674
           II C +PVTN+P   +L
Sbjct: 711 IIECQEPVTNRPTGQLL 727


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 779 PXPXPPXPPPPXXXP 823
           P P PP PPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 821 PPXPPXXPPPP 853
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 417 NSFYTKHHHFMHQGSRF-KERALIRN 343
           NS  ++ H F H  SR+ +ER+  R+
Sbjct: 215 NSLRSRTHDFQHTSSRYSRERSCSRD 240


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 852  GGGGXXGGXGGXXXGGGGXGGXGXG 778
            GGGG   G GG    GG       G
Sbjct: 1705 GGGGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 852  GGGGXXGGXGGXXXGGGGXGGXGXG 778
            GGGG   G GG    GG       G
Sbjct: 1701 GGGGSLAGLGGLGGLGGAAEASAAG 1725


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,080
Number of Sequences: 438
Number of extensions: 8210
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)