Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J21
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   121   1e-28
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   120   3e-28
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    30   0.47 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.4  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   5.8  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   7.7  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  121 bits (291), Expect = 1e-28
 Identities = 70/163 (42%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
 Frame = +1

Query: 82  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 261
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 262 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLAVIEER*IKC*QQNFGR*QASHRPHSGK 441
           RRFNGGVGR AQ K+FG TQ RWP KS +F   +++        +     +   + H  +
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIK-HV-Q 118

Query: 442 SRALPTQ---TYIPCSRVASXPYMSSPXHIEVCLSEREDAVAR 561
             A P Q   TY    RV +  Y+SSP HIE+ ++E E+AV +
Sbjct: 119 VNAAPKQRRRTYRAHGRVTA--YLSSPSHIEIIVAEEEEAVPK 159


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  120 bits (288), Expect = 3e-28
 Identities = 70/163 (42%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
 Frame = +1

Query: 82  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 261
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 262 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLAVIEER*IKC*QQNFGR*QASHRPHSGK 441
           RRFNGGVGR AQ K+FG TQ RWP KS  F   +++        +     +   + H  +
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIK-HV-Q 118

Query: 442 SRALPTQ---TYIPCSRVASXPYMSSPXHIEVCLSEREDAVAR 561
             A P Q   TY    RV +  Y+SSP HIE+ ++E E+AV +
Sbjct: 119 VNAAPKQRRRTYRAHGRVTA--YLSSPSHIEIIVAEEEEAVPK 159


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 383 NADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGSHQXPTCRLPXTSKYVSANAK 547
           N  NKT D+    +D +     P L   T R+H S + P    P TS  +  + K
Sbjct: 186 NNYNKTTDIKARSLDRLSDMTRPKLLLNTKRSHRSSEEPGASSPVTSPILKDSQK 240


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 142 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 255
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 319 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 236
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 122 PAKRVVQTSVFTLRTHMRPQWQSGRCRSVVL 214
           P K      V+  R  +   W+ GRCR VVL
Sbjct: 239 PFKTRPWKEVYAERCRVECNWRHGRCRQVVL 269


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 566 PPTDDAPSEEKLSKKKACASKE 631
           PPTD   +  +LSK+++C S E
Sbjct: 145 PPTDFLSTSTELSKRESCLSTE 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,130
Number of Sequences: 5004
Number of extensions: 55237
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)