Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J21
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   161   6e-40
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    93   2e-19
AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    34   0.11 
AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related ...    30   1.8  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical p...    28   7.3  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  161 bits (391), Expect = 6e-40
 Identities = 86/161 (53%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
 Frame = +1

Query: 91  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 270
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 271 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLAVIEER*IKC*QQNFGR*QASHR--PHSGKS 444
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL +++        +        H    H    
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGL---DVDHLVIEHINVQ 122

Query: 445 RA--LPTQTYIPCSRVASXPYMSSPXHIEVCLSEREDAVAR 561
           RA  L  +TY    R+   PYMSSP HIEV L+E+ED V++
Sbjct: 123 RAAKLRRRTYRAHGRI--NPYMSSPCHIEVILAEKEDVVSK 161


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +1

Query: 91  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 270
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
 Frame = +2

Query: 362 LLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGSHQXPTCRLPXTSKYVSAN 541
           LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHG    P    P   + + A 
Sbjct: 68  LLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHG-RINPYMSSPCHIEVILAE 126

Query: 542 AKMLSPG*PPTDD-APSEEKLSKKK 613
            + +     PTDD AP  +K SK+K
Sbjct: 127 KEDVVS--KPTDDAAPKVKKESKRK 149


>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
 Frame = -3

Query: 369 LNNCQEEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTER 199
           L+N  E FG   G       ++ C S  + +   + ++  T +++  VF     +  +ER
Sbjct: 25  LSNFDESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSER 84

Query: 198 HLPDCHCGLICVLKVNTEV*TTRFAGFRRVIR-LPRVTTH 82
            +P   CG +CV  +  +V    F GF+ +   L RV  H
Sbjct: 85  GMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRH 124


>AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related
           protein HOT-2 protein.
          Length = 162

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -3

Query: 264 TEWN---TLFLFNHVF--EVTNSTTERHLPDCHCGLICVLKVNTEV*TTRFAGFRRVIR- 103
           T W    T +++  VF     +  +ER +P   CG +CV  +  +V    F GF+ +   
Sbjct: 21  TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80

Query: 102 LPRVTTH 82
           L RV  H
Sbjct: 81  LDRVLRH 87


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
           protein F26H11.2c protein.
          Length = 2266

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 187 LPLRSHMCS*SEHGGLNHALCRISQGYPAPESNDPLLFLSRENMTRKAKILRN 29
           + L   M S      L   + R   GY   E+  P ++L R++M R A ILR+
Sbjct: 553 MALTVEMTSERREAALETMVKRQLIGYDFAEATTPQIYLHRDSMKRMASILRD 605


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
           protein F26H11.2b protein.
          Length = 1693

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 187 LPLRSHMCS*SEHGGLNHALCRISQGYPAPESNDPLLFLSRENMTRKAKILRN 29
           + L   M S      L   + R   GY   E+  P ++L R++M R A ILR+
Sbjct: 553 MALTVEMTSERREAALETMVKRQLIGYDFAEATTPQIYLHRDSMKRMASILRD 605


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
           protein F26H11.2a protein.
          Length = 1691

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 187 LPLRSHMCS*SEHGGLNHALCRISQGYPAPESNDPLLFLSRENMTRKAKILRN 29
           + L   M S      L   + R   GY   E+  P ++L R++M R A ILR+
Sbjct: 553 MALTVEMTSERREAALETMVKRQLIGYDFAEATTPQIYLHRDSMKRMASILRD 605


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +2

Query: 413  RLVIDHIQVNRAPCLRRRTYRAHGSHQXPTCRLPXTSKYVSANAKMLSPG*PPTDDAPSE 592
            R  + H  VNR   ++RR   +  +H   TC    T  +V           PPTD +PSE
Sbjct: 1197 RQTVSHSSVNREMNVQRRKVYSWSTHHM-TCTWWATQIHVYGETSR-----PPTDGSPSE 1250

Query: 593  E 595
            +
Sbjct: 1251 D 1251


>Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 86  PIIISLKRKYDKKSKNLKEFPIVS 15
           P+ I + RK  K+ KNL  FPIVS
Sbjct: 45  PLYIIVYRKNRKREKNLPTFPIVS 68


>Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 86  PIIISLKRKYDKKSKNLKEFPIVS 15
           P+ I + RK  K+ KNL  FPIVS
Sbjct: 45  PLYIIVYRKNRKREKNLPTFPIVS 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,716
Number of Sequences: 27780
Number of extensions: 332980
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)