Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J20
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392...    29   6.5  
11_07_0009 + 27318903-27318926,27318946-27319023,27319109-273192...    28   8.6  
09_02_0272 - 6555088-6555210,6555637-6555738,6555824-6555901,655...    28   8.6  
07_01_0516 - 3850252-3852870                                           28   8.6  

>06_03_0803 +
           24737115-24737366,24738921-24739004,24739152-24739255,
           24739321-24739445,24739549-24739707,24740120-24740237,
           24740317-24740851,24740948-24741042,24741153-24741431,
           24741478-24741592,24741669-24741855,24741934-24742490
          Length = 869

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 319 VHSTRFSTKYCDKSAQLKGCISSVLQGVRPCVGNEYANHI 438
           + STRFS KYC  S   KGC S+++   +  +G+  A  +
Sbjct: 568 ISSTRFSAKYC--SYFQKGCGSTMILPAKTILGSRDAPRV 605


>11_07_0009 +
           27318903-27318926,27318946-27319023,27319109-27319210,
           27319637-27319759
          Length = 108

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 17  RSHYREFLKILPVRVQPFEVEQVSLXTMMWKTVLITIFAAGVLA 148
           R  YRE++    V   P  V Q+ L     K  L  +FA+G LA
Sbjct: 39  RCQYREWIDTRRVLTPPSRVVQLELPEQYKKNRLAVLFASGSLA 82


>09_02_0272 -
           6555088-6555210,6555637-6555738,6555824-6555901,
           6555921-6555944
          Length = 108

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 17  RSHYREFLKILPVRVQPFEVEQVSLXTMMWKTVLITIFAAGVLA 148
           R  YRE++    V   P  V Q+ L     K  L  +FA+G LA
Sbjct: 39  RCQYREWIDTRRVLTPPSRVVQLELPEQYKKNRLAVLFASGSLA 82


>07_01_0516 - 3850252-3852870
          Length = 872

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 684 PPRVFXTXPPATMAXIPDSPXAPRPSLG 767
           PPR+    PP T   +P  P  P P+ G
Sbjct: 11  PPRLLPPQPPPTSRPLPPPPPPPPPAHG 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,488,617
Number of Sequences: 37544
Number of extensions: 390327
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)