Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J20
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   3.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 708 PPATMAXIPDSPXAPRPSLGHT 773
           PP  +  +P  P  PRP   HT
Sbjct: 641 PPKRIRKMPSMPLLPRPISCHT 662


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 664 GSSRSXFAHFSXKAQVMGGFHSGEALVSN 578
           G+    F HFS + +V+  F   + LVS+
Sbjct: 145 GALHLLFRHFSQRQEVLQAFKQVQLLVSD 173


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 664 GSSRSXFAHFSXKAQVMGGFHSGEALVSN 578
           G+    F HFS + +V+  F   + LVS+
Sbjct: 113 GALHLLFRHFSQRQEVLQAFKQVQLLVSD 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,869
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)