Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_J18
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 30 2.9
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 29 3.8
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 29 5.0
12_02_1014 - 25316682-25317236 28 8.8
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 28 8.8
03_06_0386 + 33555682-33556344,33557138-33557299 28 8.8
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 28 8.8
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Frame = -2
Query: 840 GGXXGXQAPGXGXGGALXAEXEI--PXXXGG**ERXPXXSRKGRXGRDQVXR*XGQGSGT 667
GG G + P G GG A + GG R P R G GR G G G
Sbjct: 125 GGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGG--GGGGGGP 182
Query: 666 GXXAXRGGFQGG 631
G GG GG
Sbjct: 183 GRAPGGGGGGGG 194
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 531 FPXAPPPLNEHHKKSTLKSXVXKPRQDYKDTRRFPPGNLPS 653
FP + LN +K S KS + + QD D FPP PS
Sbjct: 435 FPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPS 475
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 726 RKGRXGRDQVXR*XGQGSGTGXXAXRGGFQGGN 628
R+GR G+D G G G G A RGG +GG+
Sbjct: 85 RRGRKGKDAAAGAGGTG-GRGGGAGRGGGRGGS 116
>12_02_1014 - 25316682-25317236
Length = 184
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 545 APPERASQKIDAQVRXGETPTGL*RYQAFPPWKPPLXAXXPVPDP 679
+PP RAS + R G + + PP PP+ P P P
Sbjct: 89 SPPRRASNPVVHDSRFGLDCPPMPAWSPAPPVAPPVVVHRPTPRP 133
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 632 PPWKPPLXAXXPVPDPCPLYRXTWSRPFLP 721
PP PP A P+P P P T +RP +P
Sbjct: 128 PPPPPPPPARTPMPTPTPTPTPTPTRPPVP 157
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 872 DXGGXGXGVERGGXXDXRPQXGGXEGP 792
+ GG G G RGG D + GG GP
Sbjct: 11 ERGGFGRGFGRGGRGDRGGRRGGRRGP 37
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 352 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEPXASQRPGTV 507
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,673,029
Number of Sequences: 37544
Number of extensions: 415022
Number of successful extensions: 1290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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