Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J18
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    30   2.6  
AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   7.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.9  

>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 729 SRKGRXGRDQVXR*XGQGSGTGXXAXRGGFQGG 631
           S  G    D+  +  G+G G G    RGGF+GG
Sbjct: 244 SGDGEEKEDEEKKEGGEGGGRGGRGGRGGFRGG 276


>AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical
           protein E02D9.1c protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 729 SRKGRXGRDQVXR*XGQGSGTGXXAXRGGFQGG 631
           S  G    D+  +  G+G G G    RGGF+GG
Sbjct: 244 SGDGEEKEDEEKKEGGEGGGRGGRGGRGGFRGG 276


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
 Frame = +2

Query: 620 YQA-FPPWKPPLXAXXPVPDPCPLYRXTWSRPFLPFRXXXGXLSHXPPXXXGISXSAXKA 796
           YQ  +PP  PP  +  P+P P P       RP  P     G     PP   G +      
Sbjct: 256 YQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRP--PPPPSSGMWPPPPPPPPGRTPGPPGM 313

Query: 797 PPXPXP 814
           P  P P
Sbjct: 314 PGMPPP 319


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 415 TQRR*YGYPQNQGITQERTCEPXASQRPGTVKRP 516
           T RR Y YP  + +      EP +++RP T + P
Sbjct: 225 TTRRPYPYPSFEVLPHHEEYEPRSTRRPTTTEEP 258


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
 Frame = +2

Query: 620 YQA-FPPWKPPLXAXXPVPDPCPLYRXTWSRPFLPFRXXXGXLSHXPPXXXGISXSAXKA 796
           YQ  +PP  PP  +  P+P P P       RP  P     G     PP   G +      
Sbjct: 266 YQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRP--PPPPSSGMWPPPPPPPPGRTPGPPGM 323

Query: 797 PPXPXP 814
           P  P P
Sbjct: 324 PGMPPP 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,770
Number of Sequences: 27780
Number of extensions: 304787
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)