Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J17
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.69 
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +1

Query: 769 PPXXXXPXXXXPPXXXXXPXXPXXXXXXPPPPPPXXXPXXXXXPPXP 909
           PP         P      P  P      PPPPPP         PP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +1

Query: 742 PXPXXXXXXPPXXXXPXXXXPPXXXXXPXXPXXXXXXPPPPPP 870
           P P      PP    P    PP     P         PPPPPP
Sbjct: 744 PAPAPIPVPPPA---PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 725 PXXXPXXXXXXPXPXPPXXXXXXXPXPXPXPP 820
           P   P      P P PP       P P P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +1

Query: 769 PPXXXXPXXXXPPXXXXXPXXPXXXXXXPPPPPPXXXPXXXXXPPXP 909
           PP          P     P  P       PPPPP         PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +1

Query: 769 PPXXXXPXXXXPPXXXXXPXXPXXXXXXPPPPPPXXXPXXXXXPPXP 909
           PP          P     P         PPPPPP         PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +1

Query: 769 PPXXXXPXXXXPPXXXXXPXXPXXXXXXPPPPPPXXXPXXXXXPPXP 909
           PP         P         P      PPPPPP         PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +1

Query: 769 PPXXXXPXXXXPPXXXXXPXXPXXXXXXPPPPPPXXXPXXXXXPPXP 909
           PP    P     P     P         PPPPP          PP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 178 DDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKF-ADYTPEEQQSRL 321
           DD+D E  Y+  +       +L++KN Y+TF  ++F    TP   QS L
Sbjct: 367 DDSDSERSYRRVRDQYLSKPRLSDKNRYSTF--SEFPGQGTPSASQSNL 413


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 853 PPPPPPXXXPXXXXXPPXP 909
           PPPPPP   P     PP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 832 PXXXXXXPPPPPPXXXPXXXXXPP 903
           P      PPPPPP   P     PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPP 377


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -3

Query: 336 RQPQSQPALLFLRSIISKFVNAKRSIWILLVQL 238
           R  ++Q ALL L  I SKF N   + W LLVQL
Sbjct: 866 RDFRAQLALLVLFWISSKFGNIIDASWPLLVQL 898


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 856  PPPPPXXXPXXXXXPPXP 909
            PPPPP   P     PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,132
Number of Sequences: 5004
Number of extensions: 38648
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)