Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J16
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   279   4e-76
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   279   5e-76
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    31   0.16 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    30   0.37 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    29   0.85 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   0.93 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   1.1  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  279 bits (684), Expect = 4e-76
 Identities = 124/200 (62%), Positives = 159/200 (79%)
 Frame = +2

Query: 86  FQHPVHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 445
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 446 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 625
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 626 NGGTIEDKVKWAXEHLEKPI 685
           NGG++ DKV+WA EH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203



 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 29/54 (53%), Positives = 37/54 (68%)
 Frame = +3

Query: 690 VDSVFAQDEMIDCIGVTKGQGYKGVXSRWHTKXLPRXTHKGLXKSCLHWXWHPS 851
           + S F Q+EMID IGVT+G+G +G  +RW TK LPR TH+GL K      WHP+
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPA 258


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  279 bits (683), Expect = 5e-76
 Identities = 123/200 (61%), Positives = 159/200 (79%)
 Frame = +2

Query: 86  FQHPVHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 445
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 446 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 625
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 626 NGGTIEDKVKWAXEHLEKPI 685
           NGG++ DKV+WA EH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203



 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 29/54 (53%), Positives = 37/54 (68%)
 Frame = +3

Query: 690 VDSVFAQDEMIDCIGVTKGQGYKGVXSRWHTKXLPRXTHKGLXKSCLHWXWHPS 851
           + S F Q+EMID IGVT+G+G +G  +RW TK LPR TH+GL K      WHP+
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPA 258


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 702 FAQDEMIDCIGVTKGQGYKGVXSRW 776
           F   + +D  G+TKG+G+ GV  RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 247 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMNGVLKIF 80
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P N V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +2

Query: 38  DLILVXDCLPACRTENFQHPVHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIG 214
           D IL  +  P C      H  + S   +P     +  G  K FP D+P S P+  +   G
Sbjct: 282 DSILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPG 341

Query: 215 YKAGMTHVVREPDRPGSKI 271
                T  ++ P++   +I
Sbjct: 342 EDVNFTVALKVPEKSNKEI 360


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect(2) = 0.93
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 345 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 497
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269



 Score = 20.6 bits (41), Expect(2) = 0.93
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 612 WKSNLTVVPSRTK*NGPXNIWRNLSLVDSVFAQDEMI 722
           W+ N+    S        + + + SLVD  FA DE I
Sbjct: 277 WEKNIIYDESDVNKTNQSSFFIDKSLVDIDFAFDENI 313


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 74  RTENFQHP--VHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 193
           ++E  QHP  V  +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 539 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 649
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,151
Number of Sequences: 5004
Number of extensions: 73703
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)