Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J15
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.88 
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   3.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   8.2  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   8.2  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 195 SHESSGNFSSKNTSQFIEDNASK-LTTTSTTAFIFDSQVPPSST 67
           SH SS + SS ++S     ++S  +TT S++ FI    V PSS+
Sbjct: 217 SHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSS 260


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -2

Query: 249 NLNFPNSFPGCSLYTQXLSHESSGNFSSKNTSQFIEDNASKLTT 118
           N N    F      +   S  +SGNFS   T Q   DN S  +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 273 SLKNFPAVNLNFPNSFPGCSLYTQXLSHE-SSGNFSSKNTSQFIEDNASKLTTTSTTAFI 97
           SL   P VN +   S    + ++   S + S+ NF+S ++S  + +  S L+T STT   
Sbjct: 487 SLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPT 546

Query: 96  FDSQV 82
            +S V
Sbjct: 547 SNSSV 551


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 183  SGNFSSKNTSQFIEDNASKLTTTSTTAFIFDSQVPPSSTKDRPRNQN 43
            S + SS NT+       S L++++T+     S   PSST+    +++
Sbjct: 966  SESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSES 1012


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 237 PNSFPGCSLYTQXLSHESSGNFSSKNTSQFIEDNAS 130
           PN  P  ++  Q ++ ++S  F   N S ++ DN S
Sbjct: 169 PNMPPKTTVNDQDVTKDASQQFGGSNFSNYLRDNDS 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,851
Number of Sequences: 5004
Number of extensions: 33225
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)