Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_J13
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 115 9e-27
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 113 4e-26
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.34
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 5.6
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 9.7
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 9.7
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 9.7
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 115 bits (276), Expect = 9e-27
Identities = 59/123 (47%), Positives = 70/123 (56%)
Frame = +3
Query: 105 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 284
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 285 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 464
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 465 FVG 473
+G
Sbjct: 122 LLG 124
Score = 102 bits (244), Expect = 7e-23
Identities = 50/95 (52%), Positives = 62/95 (65%)
Frame = +1
Query: 454 RFPXLLGPGLNKAGKFPGLLSHQESMTXKIDEVXGTIKFQMXXVLCLSVXXGHVDMTPDX 633
+ P LLGPGL+KAGKFP +SH + + KI EV TIKFQ+ VLCL V GHVDM +
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177
Query: 634 LAXNVHLSINFLVSLLXQTXXNVPXIAYXITXGTP 738
LA N+ L+INFLVSLL + N+ + T G P
Sbjct: 178 LAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKP 212
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 113 bits (271), Expect = 4e-26
Identities = 59/123 (47%), Positives = 71/123 (57%)
Frame = +3
Query: 105 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 284
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 285 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 464
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 465 FVG 473
+G
Sbjct: 122 LLG 124
Score = 99.5 bits (237), Expect = 5e-22
Identities = 47/95 (49%), Positives = 62/95 (65%)
Frame = +1
Query: 454 RFPXLLGPGLNKAGKFPGLLSHQESMTXKIDEVXGTIKFQMXXVLCLSVXXGHVDMTPDX 633
+ P LLGPGL+KAGKFP +SH + + KI EV TIKFQ+ VLCL V GHV+M+ +
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177
Query: 634 LAXNVHLSINFLVSLLXQTXXNVPXIAYXITXGTP 738
L N+ L++NFLVSLL + N+ + T G P
Sbjct: 178 LIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKP 212
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.34
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 87 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 251
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -2
Query: 327 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 148
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 147 RHSRTRRACH 118
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 96 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 194
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 413 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 312
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 138 VNAVLQSSKDKKRNFLETV 194
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,706
Number of Sequences: 5004
Number of extensions: 50687
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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