Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J13
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   130   2e-30
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   108   5e-24
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   108   5e-24
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  130 bits (313), Expect = 2e-30
 Identities = 64/123 (52%), Positives = 78/123 (63%)
 Frame = +3

Query: 105 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 284
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 285 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 464
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 62  MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121

Query: 465 FVG 473
            +G
Sbjct: 122 ILG 124



 Score =  108 bits (259), Expect = 5e-24
 Identities = 51/95 (53%), Positives = 64/95 (67%)
 Frame = +1

Query: 454 RFPXLLGPGLNKAGKFPGLLSHQESMTXKIDEVXGTIKFQMXXVLCLSVXXGHVDMTPDX 633
           + P +LGPGLNKAGKFP +++H ES+  K DE+  T+KFQM  VLCLSV  GHV +T + 
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177

Query: 634 LAXNVHLSINFLVSLLXQTXXNVPXIAYXITXGTP 738
           L  N+ LSINFLVSLL +   NV  +    T G P
Sbjct: 178 LVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKP 212


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  108 bits (259), Expect = 5e-24
 Identities = 51/95 (53%), Positives = 64/95 (67%)
 Frame = +1

Query: 454 RFPXLLGPGLNKAGKFPGLLSHQESMTXKIDEVXGTIKFQMXXVLCLSVXXGHVDMTPDX 633
           + P +LGPGLNKAGKFP +++H ES+  K DE+  T+KFQM  VLCLSV  GHV +T + 
Sbjct: 88  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147

Query: 634 LAXNVHLSINFLVSLLXQTXXNVPXIAYXITXGTP 738
           L  N+ LSINFLVSLL +   NV  +    T G P
Sbjct: 148 LVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKP 182



 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +3

Query: 213 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 392
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 393 XXXXXXXXXXXXXXSESLIKQIPRFVG 473
                         SESLIKQIPR +G
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILG 94


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  108 bits (259), Expect = 5e-24
 Identities = 51/95 (53%), Positives = 64/95 (67%)
 Frame = +1

Query: 454 RFPXLLGPGLNKAGKFPGLLSHQESMTXKIDEVXGTIKFQMXXVLCLSVXXGHVDMTPDX 633
           + P +LGPGLNKAGKFP +++H ES+  K DE+  T+KFQM  VLCLSV  GHV +T + 
Sbjct: 57  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116

Query: 634 LAXNVHLSINFLVSLLXQTXXNVPXIAYXITXGTP 738
           L  N+ LSINFLVSLL +   NV  +    T G P
Sbjct: 117 LVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKP 151



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 28/63 (44%)
 Frame = +3

Query: 285 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 464
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 465 FVG 473
            +G
Sbjct: 61  ILG 63


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 162 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 272
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 75  IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 242
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,662
Number of Sequences: 27780
Number of extensions: 306201
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)