Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J12
         (1132 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   6.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 652 PPPXPPXPPPXAXPPPPA 705
           P P PP PPP +  P  A
Sbjct: 339 PKPAPPPPPPSSSGPDSA 356



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 673 PPPXAXPPPPAXXRG 717
           PP  A PPPP    G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 701  GGGGXAXGGGXGGXGG 654
            GGG  A  GG GG GG
Sbjct: 1706 GGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 701  GGGGXAXGGGXGGXGG 654
            GGG  A  GG GG GG
Sbjct: 1702 GGGSLAGLGGLGGLGG 1717


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 757  RXPXGGGGXPXPPXPXRCAPPXXAPXP 837
            R P   GG P P  P R      +P P
Sbjct: 1355 RGPSASGGRPVPERPERVPTVDLSPSP 1381


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 704 AGGGGXAXGGGXGGXGGG 651
           A GG    G   GG GGG
Sbjct: 34  ASGGSIVVGANNGGGGGG 51


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 646 GXPPPXPPXPPPXAXP 693
           G PP  PP  PP   P
Sbjct: 45  GPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
 Frame = +1

Query: 646 GXPPPXPPXPPPXAXP-PPPAXXRGXPXXAPA 738
           G PP     PPP   P  PP+        +PA
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,224
Number of Sequences: 438
Number of extensions: 5674
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38198817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)