Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J04
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    47   4e-06
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    46   9e-06

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 24/36 (66%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = +1

Query: 103 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFK 207
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFK 36



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +2

Query: 224 FLYTLVITDKEKAEKLKQSLPPGLQVKEV 310
           +LYTLV+ D +KAEKL+QSLPP L V EV
Sbjct: 42  YLYTLVVADAKKAEKLRQSLPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +2

Query: 224 FLYTLVITDKEKAEKLKQSLPPGLQVKEV 310
           +LYTLV+ D +KAEKL+QSLPP L V EV
Sbjct: 42  YLYTLVVADAKKAEKLRQSLPPALTVTEV 70



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 103 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFK 207
           MPR++ DIK FL  A R DA S ++KKN    VKFK
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,719
Number of Sequences: 5004
Number of extensions: 41980
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)