Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J04
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.      62   2e-09
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...    62   2e-09
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    59   2e-08
EF670720-1|ABS01307.1|  104|Homo sapiens MUC1 isoform M13 protein.     30   9.7  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score = 62.5 bits (145), Expect = 2e-09
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +1

Query: 103 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFK 207
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFK
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFK 35



 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +2

Query: 224 FLYTLVITDKEKAEKLKQSLPPGLQVKEVK 313
           +LYTLVITDKEKAEKLKQSLPPGL VKE+K
Sbjct: 41  YLYTLVITDKEKAEKLKQSLPPGLAVKELK 70


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score = 62.5 bits (145), Expect = 2e-09
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +1

Query: 103 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFK 207
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFK
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFK 35



 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +2

Query: 224 FLYTLVITDKEKAEKLKQSLPPGLQVKEVK 313
           +LYTLVITDKEKAEKLKQSLPPGL VKE+K
Sbjct: 41  YLYTLVITDKEKAEKLKQSLPPGLAVKELK 70


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +2

Query: 224 FLYTLVITDKEKAEKLKQSLPPGLQVKEVK 313
           +LYTLVITDKEKAEKLKQSLPPGL VKE+K
Sbjct: 8   YLYTLVITDKEKAEKLKQSLPPGLAVKELK 37


>EF670720-1|ABS01307.1|  104|Homo sapiens MUC1 isoform M13 protein.
          Length = 104

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 745 PAAEXTRGXGSQWGEEXGRAPNXQTAFSPGV 653
           PA E   G  + WG++    P   T+F PG+
Sbjct: 70  PATEPASGSAATWGQDVTSVPVTWTSFQPGI 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,863,022
Number of Sequences: 237096
Number of extensions: 1637446
Number of successful extensions: 3253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3253
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)