Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J03
         (1027 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.36 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 947  PPPPPPPP 970
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.36
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 949  PPPPPPPP 972
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 489  PPXPPPPP 466
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 486  PXPPPPPXXXGGA 448
            P PPPPP   G A
Sbjct: 1355 PPPPPPPPSSGQA 1367


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 947 PPPPPPPPXXPXP 985
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 946 PPPPPPPPP 972
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 946 PPPPPPPPP 972
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 663 PPXXXXPPPPP 695
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 946  PPPPPPPP 969
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 949  PPPPPPPP 972
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 490  SPXPPPPP 467
            SP PPPPP
Sbjct: 1856 SPEPPPPP 1863


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 926 PPXXXXXPPPPPPPPXXPXPXP 991
           PP     PPP  PP   P   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,099
Number of Sequences: 438
Number of extensions: 13481
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)